View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9664_low_16 (Length: 330)

Name: NF9664_low_16
Description: NF9664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9664_low_16
NF9664_low_16
[»] chr2 (1 HSPs)
chr2 (18-317)||(14785121-14785421)
[»] chr7 (3 HSPs)
chr7 (17-317)||(48898569-48898879)
chr7 (102-217)||(34184079-34184194)
chr7 (102-217)||(34204668-34204783)
[»] chr5 (3 HSPs)
chr5 (20-317)||(38061746-38062053)
chr5 (19-200)||(31116304-31116494)
chr5 (263-316)||(31116209-31116262)
[»] chr3 (8 HSPs)
chr3 (274-317)||(25661726-25661769)
chr3 (274-317)||(25668131-25668174)
chr3 (274-317)||(25674536-25674579)
chr3 (274-317)||(25681210-25681253)
chr3 (274-317)||(25689514-25689557)
chr3 (102-202)||(25660770-25660870)
chr3 (102-202)||(25667175-25667275)
chr3 (102-202)||(25673580-25673680)


Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 317
Target Start/End: Original strand, 14785121 - 14785421
Alignment:
Q  18 caatttcagcaaaatattgtgtggtggctgagcaatggtaacaatattaatttttgggtggataaataaacttctagtggaacttccatcactaatcaaa 117  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||    
T  14785121 caatttcagcaaaatattgtgtggtagctgagcaatgataacaatattaatttttggatggataaataaacttctactggaacttccatcactgatcaaa 14785220  T
Q  118 ctagtattgacacaactctatatgtgagggacgtggtaacctcctcagaagagtgggattataagttccttacttctaacttactatgtacatttgcttt 217  Q
    |||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14785221 ctagtattgacacaactctatatgcgagggatgtggtaacctcctaagaagagtgggattataagttccttacttctaacttactatgtacatttgcttt 14785320  T
Q  218 ataggttcttgctat-cctacacctatagaaacaaatgggtatgaaaatattggttagggaggaaccaacactagggatttcacaattcaacgtgcctat 316  Q
    | ||||||||||||| ||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||    
T  14785321 acaggttcttgctatccctacacgtatagaaacaaatggatatgaaaatattggctagggaggaaccaacactagggatttcataattcaaagtgcctat 14785420  T
Q  317 g 317  Q
    |    
T  14785421 g 14785421  T

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Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 17 - 317
Target Start/End: Complemental strand, 48898879 - 48898569
Alignment:
Q  17 acaatttcagcaaaatattgtgtggtggctgagcaatggtaacaatattaatttttgggtggataaataaacttctagtggaacttc---------catc 107  Q
    ||||||||| |||||||||||||||  | || || ||||||| ||||||||||||||| |||||||||   || |||||||||||||         |||     
T  48898879 acaatttcaacaaaatattgtgtggcagttgggcgatggtaataatattaatttttggatggataaatgggctcctagtggaacttctcttatgtccatt 48898780  T
Q  108 actaatcaaactagtattgacacaactctatatgtgagggacgtggtaacctcctcagaagagtgggattataagttccttacttctaacttactatgta 207  Q
    |||||||||| || |||||||||||||||  |||||||||||||||||||| ||| || ||||||||||| ||| |||||||||||||||||||  | ||    
T  48898779 actaatcaaaatattattgacacaactctccatgtgagggacgtggtaaccccctaaggagagtgggattttaatttccttacttctaacttaccgtcta 48898680  T
Q  208 catttgctttataggttcttgctat-cctacacctatagaaacaaatgggtatgaaaatattggttagggaggaaccaacactagggatttcacaattca 306  Q
    | ||||||||| ||||||||||||| ||| |||||| ||| ||  ||||   ||| |||||||||| |||||||||||||||||||||||||||||||||    
T  48898679 cctttgctttacaggttcttgctatccctgcacctaaagacactgatggacttgacaatattggttggggaggaaccaacactagggatttcacaattca 48898580  T
Q  307 acgtgcctatg 317  Q
    | ||| |||||    
T  48898579 aagtgtctatg 48898569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 102 - 217
Target Start/End: Complemental strand, 34184194 - 34184079
Alignment:
Q  102 tccatcactaatcaaactagtattgacacaactctatatgtgagggacgtggtaacctcctcagaagagtgggattataagttccttacttctaacttac 201  Q
    |||||||||||||||| |  | |||||||||| || ||||| | ||| ||||||||| | |||  ||| || |||||||| ||  |||||||||||||||    
T  34184194 tccatcactaatcaaaattatgttgacacaaccctctatgttaaggatgtggtaaccccttcaagagattgagattataattttattacttctaacttac 34184095  T
Q  202 tatgtacatttgcttt 217  Q
     || ||| ||||||||    
T  34184094 catttacctttgcttt 34184079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 102 - 217
Target Start/End: Complemental strand, 34204783 - 34204668
Alignment:
Q  102 tccatcactaatcaaactagtattgacacaactctatatgtgagggacgtggtaacctcctcagaagagtgggattataagttccttacttctaacttac 201  Q
    |||||||||||||||| |  | |||||||||| || ||||| | ||| ||||||||| | |||  ||| || |||||||| ||  |||||||||||||||    
T  34204783 tccatcactaatcaaaattatgttgacacaaccctctatgttaaggatgtggtaaccccttcaagagattgagattataattttattacttctaacttac 34204684  T
Q  202 tatgtacatttgcttt 217  Q
     || ||| ||||||||    
T  34204683 catttacctttgcttt 34204668  T

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Target: chr5 (Bit Score: 100; Significance: 2e-49; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 20 - 317
Target Start/End: Original strand, 38061746 - 38062053
Alignment:
Q  20 atttcagcaaaatattgtgtggtggctgagcaatggtaacaatattaatttttgggtggataaataaacttctagtggaacttc---------catcact 110  Q
    ||||||||||||||||||||||  | || || ||||||| ||||||||||||||  |||||||||   || |||||||||||||         ||| |||    
T  38061746 atttcagcaaaatattgtgtggcagttgggcgatggtaataatattaatttttgaatggataaatgggctcctagtggaacttctcttatgtccattact 38061845  T
Q  111 aatcaaactagtattgacacaactctatatgtgagggacgtggtaacctcctcagaagagtgggattataagttccttacttctaacttactatgtacat 210  Q
    |||||||||| |||||||| ||||||  ||||||| ||||||| |||| |||||| ||||||||||| ||| |||||||||||||||||||  | ||| |    
T  38061846 aatcaaactattattgacataactctccatgtgagtgacgtggcaaccccctcaggagagtgggattttaatttccttacttctaacttaccgtctacct 38061945  T
Q  211 ttgctttataggttcttgctat-cctacacctatagaaacaaatgggtatgaaaatattggttagggaggaaccaacactagggatttcacaattcaacg 309  Q
    |||||||| |||||||| |||| ||| |||||| ||| ||  ||||   ||| |||||||||| ||||||||||||||||||||||||||||||| || |    
T  38061946 ttgctttacaggttctttctatccctgcacctaaagacactgatggacttgacaatattggttggggaggaaccaacactagggatttcacaatttaaag 38062045  T
Q  310 tgcctatg 317  Q
    || |||||    
T  38062046 tgtctatg 38062053  T

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Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 200
Target Start/End: Complemental strand, 31116494 - 31116304
Alignment:
Q  19 aatttcagcaaaatattgtgtggtggctgagcaatggtaacaatattaatttttgggtggataaataaacttctagtggaacttc---------catcac 109  Q
    ||||| |||||||||||||||||  |||  ||||||||||||||||||| |||||| | |||||||   || | |||||||||||         ||||||    
T  31116494 aatttaagcaaaatattgtgtggcagcttggcaatggtaacaatattaacttttggatcgataaatgtgctcccagtggaacttctcttatgttcatcac 31116395  T
Q  110 taatcaaactagtattgacacaactctatatgtgagggacgtggtaacctcctcagaagagtgggattataagttccttacttctaactta 200  Q
    ||||||||| |||||| |||| |||||  ||||||||||||||||| ||| ||||| ||||||||| ||||| |||||||| |||||||||    
T  31116394 taatcaaacaagtatttacacgactctccatgtgagggacgtggtagccttctcaggagagtgggactataatttccttacctctaactta 31116304  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 263 - 316
Target Start/End: Complemental strand, 31116262 - 31116209
Alignment:
Q  263 aatattggttagggaggaaccaacactagggatttcacaattcaacgtgcctat 316  Q
    ||||||||||  || |||||||||||||||||||||||||||||| ||||||||    
T  31116262 aatattggttgcggtggaaccaacactagggatttcacaattcaaagtgcctat 31116209  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 274 - 317
Target Start/End: Original strand, 25661726 - 25661769
Alignment:
Q  274 gggaggaaccaacactagggatttcacaattcaacgtgcctatg 317  Q
    ||||||||||||||||||| | |||||||||||| |||||||||    
T  25661726 gggaggaaccaacactaggaaattcacaattcaaagtgcctatg 25661769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 274 - 317
Target Start/End: Original strand, 25668131 - 25668174
Alignment:
Q  274 gggaggaaccaacactagggatttcacaattcaacgtgcctatg 317  Q
    ||||||||||||||||||| | |||||||||||| |||||||||    
T  25668131 gggaggaaccaacactaggaaattcacaattcaaagtgcctatg 25668174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 274 - 317
Target Start/End: Original strand, 25674536 - 25674579
Alignment:
Q  274 gggaggaaccaacactagggatttcacaattcaacgtgcctatg 317  Q
    ||||||||||||||||||| | |||||||||||| |||||||||    
T  25674536 gggaggaaccaacactaggaaattcacaattcaaagtgcctatg 25674579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 274 - 317
Target Start/End: Original strand, 25681210 - 25681253
Alignment:
Q  274 gggaggaaccaacactagggatttcacaattcaacgtgcctatg 317  Q
    ||||||||||||||||||| | |||||||||||| |||||||||    
T  25681210 gggaggaaccaacactaggaaattcacaattcaaagtgcctatg 25681253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 274 - 317
Target Start/End: Original strand, 25689514 - 25689557
Alignment:
Q  274 gggaggaaccaacactagggatttcacaattcaacgtgcctatg 317  Q
    ||||||||||||||||||| | |||||||||||| |||||||||    
T  25689514 gggaggaaccaacactaggaaattcacaattcaaagtgcctatg 25689557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 202
Target Start/End: Original strand, 25660770 - 25660870
Alignment:
Q  102 tccatcactaatcaaactagtattgacacaactctatatgtgagggacgtggtaacctcctcagaagagtgggattataagttccttacttctaacttac 201  Q
    |||||||||||||| || | ||||||||||||  | | ||| | ||| ||||||||| | |||| ||| ||||||||||| ||  |||||||||| ||||    
T  25660770 tccatcactaatcagacaaatattgacacaaccttttctgttaaggatgtggtaaccccttcaggagattgggattataattttattacttctaagttac 25660869  T
Q  202 t 202  Q
    |    
T  25660870 t 25660870  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 202
Target Start/End: Original strand, 25667175 - 25667275
Alignment:
Q  102 tccatcactaatcaaactagtattgacacaactctatatgtgagggacgtggtaacctcctcagaagagtgggattataagttccttacttctaacttac 201  Q
    |||||||||||||| || | ||||||||||||  | | ||| | ||| ||||||||| | |||| ||| ||||||||||| ||  |||||||||| ||||    
T  25667175 tccatcactaatcagacaaatattgacacaaccttttctgttaaggatgtggtaaccccttcaggagattgggattataattttattacttctaagttac 25667274  T
Q  202 t 202  Q
    |    
T  25667275 t 25667275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 202
Target Start/End: Original strand, 25673580 - 25673680
Alignment:
Q  102 tccatcactaatcaaactagtattgacacaactctatatgtgagggacgtggtaacctcctcagaagagtgggattataagttccttacttctaacttac 201  Q
    |||||||||||||| || | ||||||||||||  | | ||| | ||| ||||||||| | |||| ||| ||||||||||| ||  |||||||||| ||||    
T  25673580 tccatcactaatcagacaaatattgacacaaccttttctgttaaggatgtggtaaccccttcaggagattgggattataattttattacttctaagttac 25673679  T
Q  202 t 202  Q
    |    
T  25673680 t 25673680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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