View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9664_low_17 (Length: 303)

Name: NF9664_low_17
Description: NF9664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9664_low_17
NF9664_low_17
[»] chr1 (16 HSPs)
chr1 (17-287)||(48179339-48179609)
chr1 (74-282)||(47873854-47874062)
chr1 (75-235)||(40140972-40141136)
chr1 (95-229)||(2417749-2417886)
chr1 (82-231)||(40027189-40027337)
chr1 (74-231)||(49287413-49287567)
chr1 (85-289)||(33860546-33860750)
chr1 (85-289)||(33920173-33920377)
chr1 (94-229)||(37847219-37847359)
chr1 (85-285)||(45196748-45196954)
chr1 (76-292)||(49440278-49440494)
chr1 (69-151)||(41186128-41186210)
chr1 (160-285)||(49540497-49540622)
chr1 (102-175)||(49540418-49540491)
chr1 (253-286)||(40027131-40027164)
chr1 (165-229)||(37850074-37850138)
[»] chr3 (3 HSPs)
chr3 (83-286)||(14964282-14964485)
chr3 (84-150)||(540434-540500)
chr3 (82-150)||(485609-485677)
[»] chr7 (1 HSPs)
chr7 (94-235)||(32347364-32347505)
[»] chr5 (2 HSPs)
chr5 (92-235)||(31266823-31266969)
chr5 (110-151)||(1204363-1204404)
[»] chr6 (3 HSPs)
chr6 (87-150)||(34606051-34606114)
chr6 (87-150)||(34727328-34727391)
chr6 (87-150)||(33465645-33465708)


Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-147; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 17 - 287
Target Start/End: Complemental strand, 48179609 - 48179339
Alignment:
Q  17 cacagagaccacaagttaaacggtgtacaataagcaaattttttgttttaggaaaaataacacgttgtacaataagcaagttactcaactagagaataat 116  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48179609 cacagagaccacaggttaaacggtgtacaataagcaaattttttgttttaggaaaaataacacgttgtacaataagcaagttactcaactagagaataat 48179510  T
Q  117 ctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatgaagagctggaagcgtaatgcatttttgcaattttttatcatc 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48179509 ctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatgaagagctggaagcgtaatgcatttttgcaattttttatcatc 48179410  T
Q  217 tcctgaatacacactgcataccgcagataaaataccgatgacatacacagagtttctctcatatccccaca 287  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  48179409 tcctgaatacacactgcatactgcagataaaataccgatgacatacacagagtttctctcatatccccaca 48179339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 74 - 282
Target Start/End: Complemental strand, 47874062 - 47873854
Alignment:
Q  74 taacacgttgtacaataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccat 173  Q
    ||||||| ||||||||| ||||||||||||||| ||||| |||| || |||||| || |||| |||||||| |||||  ||||  |||||  || |||||    
T  47874062 taacacgatgtacaatatgcaagttactcaactggagaaaaatcaacctcatatcgtagatgtctaaaacaacaatccaacatcagggaatgtgatccat 47873963  T
Q  174 gaagagctggaagcgtaatgcatttttgcaattttttatcatctcctgaatacacactgcataccgcagataaaataccgatgacatacacagagtttct 273  Q
    || |||||||||||||||||||||||| ||||||||||||||| ||||||||||| || ||||  | |||| ||  || |||| ||||||||||||| ||    
T  47873962 gaggagctggaagcgtaatgcatttttacaattttttatcatcccctgaatacactctacatagtgtagatgaagaactgatggcatacacagagttgct 47873863  T
Q  274 ctcatatcc 282  Q
    |||||||||    
T  47873862 ctcatatcc 47873854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 75 - 235
Target Start/End: Complemental strand, 40141136 - 40140972
Alignment:
Q  75 aacacgttgtacaataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccat- 173  Q
    |||||| ||||||| | ||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||  ||||||| |||  ||||||||     
T  40141136 aacacggtgtacaacatgcaagttactcaactagagaataatctacctcatattgtagatgtctaaaacaccaatccaacatgtgagaatctgttccata 40141037  T
Q  174 --gaagagctggaagcgtaatgcatttttgcaa-ttttttatcatctcctgaatacacactgcat 235  Q
      || ||||||||| ||| || |||||||| || |||||||||||| ||||||||||||||||||    
T  40141036 aggaggagctggaaacgtgatacatttttgtaatttttttatcatcgcctgaatacacactgcat 40140972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 95 - 229
Target Start/End: Original strand, 2417749 - 2417886
Alignment:
Q  95 agttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccat---gaagagctggaagcgtaa 191  Q
    ||||||||||||  |||||||||||| ||||||||| |||| ||||||||||||||  ||||||| |||  ||||||||   || ||||||||||||||     
T  2417749 agttactcaactgaagaataatctacctcatattgtagatgtctaaaacaccaatccaacatgtgagaatctgttccatacggaggagctggaagcgtac 2417848  T
Q  192 tgcatttttgcaattttttatcatctcctgaatacaca 229  Q
    | ||||||||||||||||||||||| ||||||||||||    
T  2417849 tacatttttgcaattttttatcatcccctgaatacaca 2417886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 82 - 231
Target Start/End: Complemental strand, 40027337 - 40027189
Alignment:
Q  82 tgtacaataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatgaagagct 181  Q
    ||||||||| |||||||||||||| |||||||||||||| ||| || || || | |||||||| |||||  |||||   |||  |||||||||| |||||    
T  40027337 tgtacaatatgcaagttactcaacaagagaataatctacctca-atcgtagaggtctaaaacatcaatccaacatgctagaaaatgttccatgaggagct 40027239  T
Q  182 ggaagcgtaatgcatttttgcaattttttatcatctcctgaatacacact 231  Q
    ||||||||||| |||||||| ||||||||| |||| ||||||||||||||    
T  40027238 ggaagcgtaatacatttttgtaattttttaccatcccctgaatacacact 40027189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 74 - 231
Target Start/End: Complemental strand, 49287567 - 49287413
Alignment:
Q  74 taacacgttgtacaataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccat 173  Q
    ||||||| |||| ||||  ||||| |||||||||| ||||||||||| ||||||||| |||| ||||| ||||||||  |||||| ||||  || | |||    
T  49287567 taacacggtgtataatatccaagtcactcaactagggaataatctacctcatattgtagatgtctaaatcaccaatcaaacatgtaggaatgtgctgcat 49287468  T
Q  174 gaagagctggaagcgtaatgcatttttgcaattttttatcatctcctgaatacacact 231  Q
       ||||||||||| |||||||||||| ||||||||||||||| ||  ||||||||||    
T  49287467 ---gagctggaagcataatgcattttttcaattttttatcatccccgaaatacacact 49287413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 85 - 289
Target Start/End: Complemental strand, 33860750 - 33860546
Alignment:
Q  85 acaataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatgaagagctgga 184  Q
    |||||| ||| | |||||||||||||||||||||| |||||   || ||   |||| |||||||||  ||||| | ||||||||||||| || || || |    
T  33860750 acaatatgcaggctactcaactagagaataatctatttcattccgtagacatctaatacaccaatcaaacatgagagaacttgttccatcaacagttgaa 33860651  T
Q  185 agcgtaatgcatttttgcaattttttatcatctcctgaatacacactgcataccgcagataaaataccgatgacatacacagagtttctctcatatcccc 284  Q
    | |||||| ||||||||||| ||||||||||||| |||||||||||| |||   | | | ||   |  ||||| |||||||||||| |||||||||||||    
T  33860650 accgtaatacatttttgcaactttttatcatctcatgaatacacactacatcttgtaaaaaattgattgatgatatacacagagttgctctcatatcccc 33860551  T
Q  285 acagg 289  Q
    |||||    
T  33860550 acagg 33860546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 85 - 289
Target Start/End: Original strand, 33920173 - 33920377
Alignment:
Q  85 acaataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatgaagagctgga 184  Q
    |||||| ||| | |||||||||||||||||||||| |||||   || ||   |||| |||||||||  ||||| | ||||||||||||| || || || |    
T  33920173 acaatatgcaggctactcaactagagaataatctatttcattccgtagacatctaatacaccaatcaaacatgagagaacttgttccatcaacagttgaa 33920272  T
Q  185 agcgtaatgcatttttgcaattttttatcatctcctgaatacacactgcataccgcagataaaataccgatgacatacacagagtttctctcatatcccc 284  Q
    | |||||| ||||||||||| ||||||||||||| |||||||||||| |||   | | | ||   |  ||||| |||||||||||| |||||||||||||    
T  33920273 accgtaatacatttttgcaactttttatcatctcatgaatacacactacatcttgtaaaaaattgattgatgatatacacagagttgctctcatatcccc 33920372  T
Q  285 acagg 289  Q
    |||||    
T  33920373 acagg 33920377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 94 - 229
Target Start/End: Complemental strand, 37847359 - 37847219
Alignment:
Q  94 aagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatgaagagctggaagcgtaatg 193  Q
    |||||||||||||||| ||||||||||||||||| ||  ||| ||||| ||||||||  || ||||| | ||||||||||| | | || |||||||||||    
T  37847359 aagttactcaactagaaaataatctacttcatatcgtacatgtctaaatcaccaatcaaacttgtggaatcttgttccatggaaacctagaagcgtaatg 37847260  T
Q  194 cattttt-----gcaattttttatcatctcctgaatacaca 229  Q
    |||||||      |||||| |||||||||||||||||||||    
T  37847259 catttttttttctcaatttgttatcatctcctgaatacaca 37847219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 85 - 285
Target Start/End: Complemental strand, 45196954 - 45196748
Alignment:
Q  85 acaataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatgaagagctg-- 182  Q
    |||||| |||||||||| |||||||||||||||||  |||||||||||||| ||||||||||||||| ||||     |  ||||| ||| | ||||||      
T  45196954 acaatatgcaagttacttaactagagaataatctatctcatattgttgatgtctaaaacaccaatcgaacatcaaacacattgttgcatcaggagctgga 45196855  T
Q  183 ----gaagcgtaatgcatttttgcaattttttatcatctcctgaatacacactgcataccgcagataaaataccgatgacatacacagagtttctctcat 278  Q
        |||| ||||||| ||||||||||||||||||||  ||||||||| |||| ||||  | |||||||| |  |||| |||||| ||| || | |||||    
T  45196854 actagaagtgtaatgcttttttgcaattttttatcattccctgaatacgcactacatattgtagataaaagattgatgtcatacatagaattgcactcat 45196755  T
Q  279 atcccca 285  Q
    |||||||    
T  45196754 atcccca 45196748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 76 - 292
Target Start/End: Original strand, 49440278 - 49440494
Alignment:
Q  76 acacgttgtacaataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatga 175  Q
    |||| |||| ||||| |||||||||| ||| ||||||||||||||||||| | || |||| ||||||||||||||| |||||  | | | |||  |||||    
T  49440278 acacattgtgcaatatgcaagttactaaaccagagaataatctacttcatgtcgtagatgtctaaaacaccaatcgaacatggagaagcctgtatcatga 49440377  T
Q  176 agagctggaagcgtaatgcatttttgcaattttttatcatctcctgaatacacactgcataccgcagataaaataccgatgacatacacagagtttctct 275  Q
     ||  ||||||||| ||| | |||||  |||||||||| || | ||||||||   | |||   | |||||||| || ||||||||| ||||| || ||||    
T  49440378 ggatttggaagcgtgatgtacttttgtgattttttatcgtcccatgaatacatgatacatgttgtagataaaacactgatgacataaacagaattactct 49440477  T
Q  276 catatccccacaggttc 292  Q
    |||||||||||| ||||    
T  49440478 catatccccacatgttc 49440494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 69 - 151
Target Start/End: Complemental strand, 41186210 - 41186128
Alignment:
Q  69 aaaaataacacgttgtacaataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcg 151  Q
    |||| ||||||  ||||||||| |||||||||||||||||| |||||||||  ||||||||| |||||||||| |||||||||    
T  41186210 aaaagtaacacaatgtacaatatgcaagttactcaactagaaaataatctatctcatattgtagatgcctaaaccaccaatcg 41186128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 160 - 285
Target Start/End: Original strand, 49540497 - 49540622
Alignment:
Q  160 ggaacttgttccatgaagagctggaagcgtaatgcatttttgcaattttttatcatctcctgaatacacactgcataccgcagataaaataccgatgaca 259  Q
    |||||||||| ||||| |||||||||   ||||| ||||||| || ||||||||||| |||||||||||||| ||||  | ||||  || || |||||||    
T  49540497 ggaacttgtttcatgaggagctggaattttaatgtatttttgaaactttttatcatcacctgaatacacactacatattgtagatccaagacggatgaca 49540596  T
Q  260 tacacagagtttctctcatatcccca 285  Q
    |||| |||||| ||||| ||||||||    
T  49540597 tacatagagttgctctcgtatcccca 49540622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 175
Target Start/End: Original strand, 49540418 - 49540491
Alignment:
Q  102 caactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatga 175  Q
    ||||||||||||||||||| |||||| || |||  |||||||| |||||  |||||  ||||||||||||||||    
T  49540418 caactagagaataatctacctcatatcgtagatttctaaaacaacaatccaacatgaaggaacttgttccatga 49540491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 286
Target Start/End: Complemental strand, 40027164 - 40027131
Alignment:
Q  253 gatgacatacacagagtttctctcatatccccac 286  Q
    |||||||||||||||||| |||||||||||||||    
T  40027164 gatgacatacacagagttactctcatatccccac 40027131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 229
Target Start/End: Complemental strand, 37850138 - 37850074
Alignment:
Q  165 ttgttccatgaagagctggaagcgtaatgcatttttgcaattttttatcatctcctgaatacaca 229  Q
    |||||||||| | || ||||| |||||||||||||| |||||| |||||||  ||||||| ||||    
T  37850138 ttgttccatggaaagttggaaacgtaatgcatttttacaatttgttatcattccctgaatgcaca 37850074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 4e-47; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 83 - 286
Target Start/End: Complemental strand, 14964485 - 14964282
Alignment:
Q  83 gtacaataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatgaagagctg 182  Q
    |||||||| |||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||   |||   | | |||||| |||   ||||||    
T  14964485 gtacaatatgcaaattactcaactagagaataatctacttcatattgtagatgtctaaaacaccaatctaccatcaagcaccttgttgcatctggagctg 14964386  T
Q  183 gaagcgtaatgcatttttgcaattttttatcatctcctgaatacacactgcataccgcagataaaataccgatgacatacacagagtttctctcatatcc 282  Q
    |||||||||||||||||||||||| ||||||||| || ||||||||||| ||||  | |||||||| || |||||||||||||||||| || ||||||||    
T  14964385 gaagcgtaatgcatttttgcaattgtttatcatccccagaatacacactacatattgtagataaaagactgatgacatacacagagttgctttcatatcc 14964286  T
Q  283 ccac 286  Q
    ||||    
T  14964285 ccac 14964282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 150
Target Start/End: Original strand, 540434 - 540500
Alignment:
Q  84 tacaataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatc 150  Q
    |||||||| || |||||||| ||||||||||||| || ||||||||||||||  |||| ||||||||    
T  540434 tacaataaccatgttactcatctagagaataatccacctcatattgttgatgtttaaagcaccaatc 540500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 150
Target Start/End: Original strand, 485609 - 485677
Alignment:
Q  82 tgtacaataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatc 150  Q
    |||||||||| || |||||||| || ||||| |||| || |||||||||||||| ||||| ||||||||    
T  485609 tgtacaataaccatgttactcatctggagaaaaatccacctcatattgttgatgtctaaagcaccaatc 485677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 94 - 235
Target Start/End: Original strand, 32347364 - 32347505
Alignment:
Q  94 aagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatgaagagctggaagcgtaatg 193  Q
    |||||| |||||||||||||||||||||||| ||||| |||| ||||||||||||||| || || |||| ||| |||||| | ||||||||||| |||||    
T  32347364 aagttattcaactagagaataatctacttcagattgtagatgtctaaaacaccaatcgaacttgagggatctttttccataaggagctggaagcataatg 32347463  T
Q  194 catttttgcaattttttatcatctcctgaatacacactgcat 235  Q
    |||||||||||| |||||||||| |||||||| |||| ||||    
T  32347464 catttttgcaatcttttatcatcccctgaatagacacggcat 32347505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 92 - 235
Target Start/End: Complemental strand, 31266969 - 31266823
Alignment:
Q  92 gcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatgaagagctggaagcgtaa 191  Q
    |||| |||||||||||||||||||||||||||| || || |||  |||||| || | ||| || |   ||||||||||| || | ||| |||||| ||||    
T  31266969 gcaaattactcaactagagaataatctacttcagatcgtagatttctaaaatactagtcgaacttaaaggaacttgttctattaggagttggaagtgtaa 31266870  T
Q  192 tgcatttttgcaatt---ttttatcatctcctgaatacacactgcat 235  Q
    |||||||||||||||   |||||||||| |||||||| ||| |||||    
T  31266869 tgcatttttgcaattttattttatcatcccctgaatagacattgcat 31266823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 151
Target Start/End: Original strand, 1204363 - 1204404
Alignment:
Q  110 gaataatctacttcatattgttgatgcctaaaacaccaatcg 151  Q
    ||||||||||| ||||| |||||||| |||||||||||||||    
T  1204363 gaataatctacctcatagtgttgatgtctaaaacaccaatcg 1204404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 150
Target Start/End: Complemental strand, 34606114 - 34606051
Alignment:
Q  87 aataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatc 150  Q
    |||||||| | |||||||| |||| ||||||||| ||||||||| |||| ||||||||||||||    
T  34606114 aataagcatgctactcaacgagagtataatctacctcatattgtagatgtctaaaacaccaatc 34606051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 150
Target Start/End: Complemental strand, 34727391 - 34727328
Alignment:
Q  87 aataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatc 150  Q
    |||||||| | |||||||| |||| ||||||||| ||||||||| |||| ||||||||||||||    
T  34727391 aataagcatgctactcaacgagagtataatctacctcatattgtagatgtctaaaacaccaatc 34727328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 87 - 150
Target Start/End: Original strand, 33465645 - 33465708
Alignment:
Q  87 aataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatc 150  Q
    |||||||| | |||||||  |||| ||||||||| ||||||||| |||| ||||||||||||||    
T  33465645 aataagcatgctactcaaaaagagtataatctacctcatattgtagatgtctaaaacaccaatc 33465708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University