View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9664_low_25 (Length: 240)
Name: NF9664_low_25
Description: NF9664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9664_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 54424455 - 54424233
Alignment:
| Q |
7 |
gctagccactatgcagagtaaagtagcttctttattgctccaggaagcaacgttcaaaaatattttggctcgcagacggtgacacaaacagcaacttttt |
106 |
Q |
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| T |
54424455 |
gctagccactatgcagaataaattagcttctttattgctccaggaagcaacgttcaaaaatattttggctcgcagacggggacacaaacaacaacttttt |
54424356 |
T |
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| Q |
107 |
tcatgcttcagcgttagccaggaaaagtaaaaatatggtaaagaagcttcgtgacaattctggtaattgggttacatcacatgaagacctctgcactctc |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
54424355 |
tcatgcttcagcgttagccaggaaaagtaaaaatatggtaaagaagcttcgtgacaattctggtaattgggttacatcacatgaagacttctgcactctc |
54424256 |
T |
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| Q |
207 |
gttcataattacttcacctctct |
229 |
Q |
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||||||||||||||||||||||| |
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| T |
54424255 |
gttcataattacttcacctctct |
54424233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 50 - 227
Target Start/End: Original strand, 20120444 - 20120621
Alignment:
| Q |
50 |
gaagcaacgttcaaaaatattttggctcgcagacggtgacacaaacagcaacttttttcatgcttcagcgttagccaggaaaagtaaaaatatggtaaag |
149 |
Q |
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| T |
20120444 |
gaagcagcgttcgaaaattttttggctcgcgaaaggggacacaaacagcagattttttcatgcttcagcatctgtcaggaaaaataaaaatacaataaag |
20120543 |
T |
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| Q |
150 |
aagcttcgtgacaattctggtaattgggttacatcacatgaagacctctgcactctcgttcataattacttcacctct |
227 |
Q |
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| T |
20120544 |
aagctacgtgacagttcagttaattggattacggcgcatgaagacctttgtgctcttgttcataactacttcacctct |
20120621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 115
Target Start/End: Original strand, 30168276 - 30168342
Alignment:
| Q |
49 |
ggaagcaacgttcaaaaatattttggctcgcagacggtgacacaaacagcaacttttttcatgcttc |
115 |
Q |
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||||||| |||||||||||||||||||| | || ||||||| ||||||||| || ||||| ||||| |
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| T |
30168276 |
ggaagcagcgttcaaaaatattttggctatctgagggtgacataaacagcaagttctttcacgcttc |
30168342 |
T |
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