View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9664_low_29 (Length: 228)
Name: NF9664_low_29
Description: NF9664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9664_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 2735344 - 2735568
Alignment:
| Q |
1 |
caatctagggactctttgctcgcatttatgtgtttgtaaaaattgtgaagttcagttcaaaagatattattctttgaaatcaaacattgtttttggtaat |
100 |
Q |
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| T |
2735344 |
caatctagggactctttgctcgcatttatgtgtttgtaaaaattgtgaagttcagttcaaaagatattattctttgaaatcaagcattgtttttggtaat |
2735443 |
T |
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| Q |
101 |
cctatttgaaatatatcaaacactaaatatgaatacatttttcaactaagatttggac----attaatttgttaatttgtcacggtgtaacttaaactca |
196 |
Q |
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| T |
2735444 |
cctatttgaaatatatcaaacattaaatatgaatacatttttcaactaagatttggacattaattaatttgttaatttgtcacggtgtaacttaaactca |
2735543 |
T |
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| Q |
197 |
actctcattggtagaaaccaagaat |
221 |
Q |
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||||||||||||||||||||||||| |
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| T |
2735544 |
actctcattggtagaaaccaagaat |
2735568 |
T |
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