View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9664_low_3 (Length: 707)

Name: NF9664_low_3
Description: NF9664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9664_low_3
NF9664_low_3
[»] chr8 (1 HSPs)
chr8 (5-701)||(42222512-42223204)


Alignment Details
Target: chr8 (Bit Score: 603; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 603; E-Value: 0
Query Start/End: Original strand, 5 - 701
Target Start/End: Complemental strand, 42223204 - 42222512
Alignment:
Q  5 tttggtgttgaggtgggtgggaaaaaatttacattccaaaaagccccttacacagagaataataaccaacaaattgaatatcaatcaagtgaaaagaatg 104  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||    
T  42223204 tttgatgttgagatgggtgggaaaaaatttacattccaaaaagccccttacacagagaataataaccaacaaattgaatatcaa----gtgaaaagaatg 42223109  T
Q  105 gaaaggaaaatggaaccatttcaagtcagagtaaggttcagaagaatagaattgatatgcccattgtaaaacatccagcggccacccaagggcttaaacg 204  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  42223108 gaaaggaaaatggaaacatttcaagtcagagtaaggttcagaagaatagaattgatacgcccattgtaaaacatccaacggccacccaagggcttaaacg 42223009  T
Q  205 ttcacctgcgcaataacatgtaaactaaagtagtcaataaatctcaaatagaggaaaagccaaactagaagaccacaatgcaactcccttcgccaaaa-g 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  42223008 ttcacctgcgcaataacatgtaaactaaagtagtcaataaatctcgaatagaggaaaagccaaactagaagaccacaatgcaactcccttcgccaaaaag 42222909  T
Q  304 aagaccactccaaagtacgagcgaaagacaaagtcataaaaccaaactagaattttgctttctaattagagttacaaatgctagaatccacatgccacag 403  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  42222908 aagaccactccaaagtacgagcgaaagataaagtcataaaaccaaactagaattttgctttctaattagagttacaaaggctagaatccacatgccacag 42222809  T
Q  404 tgtgactgagatacaagtctccaaacgaggagtcaatgaataataaaattaagcaaaccttttcattaagtgaacggattaatcacctgaacttttgctc 503  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42222808 tgtgactgagatacaagtctcctaacgaggagtcaatgaataataaaattaagcaaaccttttcattaagtgaacggattaatcacctgaacttttgctc 42222709  T
Q  504 ctacccaatacaagtaaaaactcagaaggaaaaacataaaagcacaatgaagttatataacaacgtggcatttagtannnnnnnaaaccagtggaggcaa 603  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||    
T  42222708 ctacccaatacaagtaaaaactcagaaggaaaaacataaaagcacaatgaagttatataacaacgtggcatttagta-ggggggaaaccagtggaggcaa 42222610  T
Q  604 ttaaatattaatagtctttaacggtttcggcttggttttctgtatttactgtattctccccaaaacaatttaatagtaatcatttgcaccatgttttc 701  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42222609 ttaaatattaatagtctttaatggttttggcttggttttctgtatttactgtattctccccaaaacaatttaatagtaatcatttgcaccatgttttc 42222512  T

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