View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9664_low_5 (Length: 496)
Name: NF9664_low_5
Description: NF9664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9664_low_5 |
 | |
|
| [»] chr1 (3 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 439; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 34 - 496
Target Start/End: Complemental strand, 12401899 - 12401437
Alignment:
| Q |
34 |
ctcctgctgcatcacctgtaatcgaaagtggaaatggtggtaataacaataacaatggtggtaataataataacaatgatgatagtgtcacaagttttcc |
133 |
Q |
| |
|
|||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12401899 |
ctcccgcttcatcatctgtaatcgaaagtggaaatggtggtaataacaataacaatggtggtaataataataacaatgatgatagtgtcacaagttttcc |
12401800 |
T |
|
| Q |
134 |
tgccacaaattttcctaatgagaggctaaaacatgcttatgttgcatttcaagcatggaaagatgttattcattctgacccttttaacacaactggtaat |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
12401799 |
tgccacaaattttcctaatgagaggctaaaacatgcttatgttgcatttcaagcatggaaagatgctattcattctgacccttttaacacaactggtaat |
12401700 |
T |
|
| Q |
234 |
tgggttggaactgatgtttgttcttacactggtgtcttttgtgctcctgctcttgatgatcctaaattgaatgttgtagccggtgtcgatcttactcacg |
333 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12401699 |
tgggttggtactgatgtttgttcttacactggtgtcttttgtgctcctgctcttgatgatcctaaattgaatgttgtagccggtgtcgatcttactcacg |
12401600 |
T |
|
| Q |
334 |
ccgacattgctggtcaccttccagaagagttaggcctattgaaagatgctgctcttttccatgttaactcaaacagattctgtggtattattccagagag |
433 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12401599 |
ccgacattgctggtcaccttccagaagagttaggcctattgaaagatgctgctcttttccatgttaactcaaacagattctgtggtattattccagagag |
12401500 |
T |
|
| Q |
434 |
ctttaaaaatctcacccttatgcgtgagtttgatatcagtaacaaccatttcgtcggcaattt |
496 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12401499 |
ctttaaaaatctcacccttatgcatgagtttgatatcagtaacaaccatttcgtcggcaattt |
12401437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 34 - 90
Target Start/End: Complemental strand, 12401974 - 12401918
Alignment:
| Q |
34 |
ctcctgctgcatcacctgtaatcgaaagtggaaatggtggtaataacaataacaatg |
90 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
12401974 |
ctcccgcttcatcacctgtaatcgaaagtggaaatggtggtaataataataacaatg |
12401918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 116
Target Start/End: Complemental strand, 12401942 - 12401913
Alignment:
| Q |
87 |
aatggtggtaataataataacaatgatgat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
12401942 |
aatggtggtaataataataacaatgatgat |
12401913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University