View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9664_low_7 (Length: 474)

Name: NF9664_low_7
Description: NF9664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9664_low_7
NF9664_low_7
[»] chr3 (23 HSPs)
chr3 (10-427)||(6245807-6246224)
chr3 (10-427)||(6169411-6169825)
chr3 (10-203)||(6266414-6266607)
chr3 (10-414)||(6259687-6260088)
chr3 (55-372)||(6238237-6238548)
chr3 (263-414)||(6266224-6266375)
chr3 (11-225)||(6143023-6143234)
chr3 (309-411)||(6590747-6590849)
chr3 (287-414)||(13269985-13270112)
chr3 (10-225)||(13269705-13269917)
chr3 (294-427)||(6721467-6721600)
chr3 (316-413)||(6917632-6917735)
chr3 (70-240)||(6590523-6590693)
chr3 (306-414)||(6883037-6883145)
chr3 (168-223)||(6900818-6900873)
chr3 (287-413)||(6142817-6142949)
chr3 (294-350)||(6850140-6850196)
chr3 (287-411)||(7750535-7750659)
chr3 (73-192)||(6883274-6883390)
chr3 (166-242)||(6850046-6850122)
chr3 (306-411)||(6900624-6900729)
chr3 (163-230)||(5250873-5250940)
chr3 (126-187)||(8568172-8568233)
[»] scaffold0425 (2 HSPs)
scaffold0425 (166-242)||(13154-13230)
scaffold0425 (288-350)||(13242-13304)
[»] chr7 (1 HSPs)
chr7 (287-350)||(6572695-6572758)
[»] chr1 (1 HSPs)
chr1 (302-369)||(35139809-35139876)


Alignment Details
Target: chr3 (Bit Score: 418; Significance: 0; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 10 - 427
Target Start/End: Complemental strand, 6246224 - 6245807
Alignment:
Q  10 gcagagacaaagaagtacgagaatcaaaacgtgaagaattgggttgatgatgcgagtaatgaggtatacgaattagatcaactattggacatcattgcta 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6246224 gcagagacaaagaagtacgagaatcaaaacgtgaagaattgggttgatgatgcgagtaatgaggtatacgaattagatcaactattggacatcattgcta 6246125  T
Q  110 gtgacgctgcaaaacaaaagggaaagatacaacgctttctttcaggttctatcaatcgatttgaatctaggattaaagtattgctcaagaggctagagtt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6246124 gtgacgctgcaaaacaaaagggaaagatacaacgctttctttcaggttctatcaatcgatttgaatctaggattaaagtattgctcaagaggctagagtt 6246025  T
Q  210 tcttgcagatcaaaagaatatattgggacttcacgaattaagtcgttattattatgaagatggagccagcagattttcaactgcatctttggtggctgaa 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6246024 tcttgcagatcaaaagaatatattgggacttcacgaattaagtcgttattattatgaagatggagccagcagattttcaactgcatctttggtggctgaa 6245925  T
Q  310 tctgtgatatatggtagagagcatgagaaagaagaaataattgaatttttactttcagacagtcacggttacaaccgggtatccataatcagtatagtgg 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6245924 tctgtgatatatggtagagagcatgagaaagaagaaataattgaatttttactttcagacagtcacggttacaaccgggtatccataatcagtatagtgg 6245825  T
Q  410 gtctggacgggataggta 427  Q
    ||||||||||||||||||    
T  6245824 gtctggacgggataggta 6245807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 10 - 427
Target Start/End: Complemental strand, 6169825 - 6169411
Alignment:
Q  10 gcagagacaaagaagtacgagaatcaaaacgtgaagaattgggttgatgatgcgagtaatgaggtatacgaattagatcaactattggacatcattgcta 109  Q
    |||||||||||| ||||||| |||| | |||| ||||||||||||||||||   || ||| || |||||||| |||| ||||| |||||  |||||||||    
T  6169825 gcagagacaaagcagtacgaaaatctagacgtaaagaattgggttgatgatatcaggaataagatatacgaagtagagcaactgttggatgtcattgcta 6169726  T
Q  110 gtgacgctgcaaaacaaaagggaaagatacaacgctttctttcaggttctatcaatcgatttgaatctaggattaaagtattgctcaagaggctagagtt 209  Q
     |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |    
T  6169725 ctgacgccgcacaacaaaagggaaagatacaacgctttctttcaggttctatcaatcgatttgaatctaggattaaagtattgatcaagaggctaaaggt 6169626  T
Q  210 tcttgcagatcaaaagaatatattgggacttca--cgaattaagtcgttattattatgaagatggagccagcagattttcaactgcatctttggtggctg 307  Q
    ||||||| | |||||  ||| ||||  ||||||   | ||||     || |||| ||||||||||||||||||  |||  |||| |||| ||  ||  ||    
T  6169625 tcttgcaaaacaaaatgatagattgcaacttcatcaggatta-----ttgttatcatgaagatggagccagcaattttggaacttcatcattcatgaatg 6169531  T
Q  308 aatctgtgatatatggtagagagcatgagaaagaagaaataattgaatttttactttcagacagtcacggttacaaccgggtatccataatcagtatagt 407  Q
    ||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||| ||||||||||||| ||    
T  6169530 aatctatcatatatggtagagagcatgagaaagaagaaataattgattttttactttcatacagtcacggtgacaaccgggtacccataatcagtatcgt 6169431  T
Q  408 gggtctggacgggataggta 427  Q
    ||||||| ||||||||||||    
T  6169430 gggtctgaacgggataggta 6169411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 10 - 203
Target Start/End: Complemental strand, 6266607 - 6266414
Alignment:
Q  10 gcagagacaaagaagtacgagaatcaaaacgtgaagaattgggttgatgatgcgagtaatgaggtatacgaattagatcaactattggacatcattgcta 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6266607 gcagagacaaagaagtacgagaatcaaaacgtgaagaattgggttgatgatgcgagtaatgaggtatacgaattagatcaactgttggacatcattgcta 6266508  T
Q  110 gtgacgctgcaaaacaaaagggaaagatacaacgctttctttcaggttctatcaatcgatttgaatctaggattaaagtattgctcaagaggct 203  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6266507 gtgactctgcaaatcaaaagggaaagatacaacgctttctttcaggttctatcaatcggtttgaatctaggattaaagtattgctcaagaggct 6266414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 10 - 414
Target Start/End: Complemental strand, 6260088 - 6259687
Alignment:
Q  10 gcagagacaaagaagtacgagaatcaaaacgtgaagaattgggttgatgatgcgagtaatgaggtatacgaattagatcaactattggacatcattgcta 109  Q
    |||||||||||| |||||||| ||| |  |||||||  |||| ||||||||| ||||||||||||||||||||| || |||||||||||  |||||||||    
T  6260088 gcagagacaaagcagtacgaggatctaggcgtgaagtgttggcttgatgatgtgagtaatgaggtatacgaattggaacaactattggatgtcattgcta 6259989  T
Q  110 gtgacgctgcaaaacaaaagggaaagatacaacgctttctttcaggttctatcaatcgatttgaatctaggattaaagtattgctcaagaggctagagtt 209  Q
     |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  6259988 ctgacgccgcacaacaaaagggaaagatacaacgctttctttcaggttctatcaatcgatttgaatctaggattaaagtattgcttaagaggctagagtt 6259889  T
Q  210 tcttgcagatcaaaagaatatattgggacttcacgaattaagtcgttattattatgaagatggagccagcagattttcaactgcatctttggtggctgaa 309  Q
    |||||||    ||||   || ||||| |||||| || || | |  |||||  ||||||||  |||||||| | ||  | |||   || ||  ||||||||    
T  6259888 tcttgcaatggaaaaatctagattggaacttcaagagtttactaattatttatatgaagaaagagccagcggtttcgctact---tcattcatggctgaa 6259792  T
Q  310 tctgtgatatatggtagagagcatgagaaagaagaaataattgaatttttactttcagacagtcacggttacaaccgggtatccataatcagtatagtgg 409  Q
    ||| | |||||||||||||| | ||| ||||| ||||||||  |||||||||||||||||||| ||      |||| |||||||||||||||||||||||    
T  6259791 tctatcatatatggtagagaacgtgaaaaagaggaaataatcaaatttttactttcagacagttacaaccgaaaccaggtatccataatcagtatagtgg 6259692  T
Q  410 gtctg 414  Q
    |||||    
T  6259691 gtctg 6259687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 55 - 372
Target Start/End: Complemental strand, 6238548 - 6238237
Alignment:
Q  55 gatgatgcgagtaatgaggtatacgaattagatcaactattggacatcattgctagtgacgctgcaaaacaaaagggaaagatacaacgctttctttcag 154  Q
    |||||||  ||| ||| |||||| |||||||| ||| |||||||  ||||||||| ||| |||||| |||||||||||||||||||||||| ||||||||    
T  6238548 gatgatggcagtgatgcggtataagaattagagcaagtattggatgtcattgctactgatgctgcacaacaaaagggaaagatacaacgctatctttcag 6238449  T
Q  155 gttctatcaatcgatttgaatctaggattaaagtattgctcaagaggctagagtttcttgcagatcaaaagaatatattgggacttcacgaattaagtcg 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||| ||||  ||||||       |||      
T  6238448 gttctatcaatcgatttgaatctaggattaaagtattgctcaagaggttagagtttcttgcaaatcaaaaggatagattgcaacttca------tagttc 6238355  T
Q  255 ttattattatgaagatggagccagcagatttt-caactgcatctttggtggctgaatctgtgatatatggtagagagcatgagaaagaagaaataattga 353  Q
    ||||||||||||||||||||||||| |||||| | ||| |||| ||  ||||||||||| |  ||||||||||||||| ||| ||||| |||||| | ||    
T  6238354 ttattattatgaagatggagccagc-gattttgctacttcatcattcatggctgaatctatcgtatatggtagagagcgtgaaaaagaggaaatagtcga 6238256  T
Q  354 atttttactttcagacagt 372  Q
    |||||||||||||||||||    
T  6238255 atttttactttcagacagt 6238237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 263 - 414
Target Start/End: Complemental strand, 6266375 - 6266224
Alignment:
Q  263 atgaagatggagccagcagattttcaactgcatctttggtggctgaatctgtgatatatggtagagagcatgagaaagaagaaataattgaatttttact 362  Q
    |||||| ||||||||||||||||||| |||||||||||| |  ||||| ||| ||||||||||||||||||||| |||| ||||| ||||| ||||||||    
T  6266375 atgaaggtggagccagcagattttcagctgcatctttggggcatgaatatgtcatatatggtagagagcatgagcaagaggaaatgattgattttttact 6266276  T
Q  363 ttcagacagtcacggttacaaccgggtatccataatcagtatagtgggtctg 414  Q
    |||||| ||||||||| | |||| | || |||||||||||||||||||||||    
T  6266275 ttcagatagtcacggtgagaaccagctacccataatcagtatagtgggtctg 6266224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 11 - 225
Target Start/End: Complemental strand, 6143234 - 6143023
Alignment:
Q  11 cagagacaaagaagtacgagaatcaaaacgtgaagaattgggttgatgatgcgagtaatgaggtatacgaattagatcaactattggacatcattgctag 110  Q
    ||||||||||| ||||| | ||||||| ||||||||||||| ||||||||| |||| ||| | |||| ||| | || |||||||||||  | |||||||     
T  6143234 cagagacaaagcagtaccaaaatcaaaccgtgaagaattggcttgatgatgtgagtcatgtgttatatgaagtggagcaactattggatgttattgctac 6143135  T
Q  111 tgacgctgcaaaacaaaagggaaagatacaacgctttctttcaggttctatcaatcgatttgaatctaggattaaagtattgctcaagaggctagagttt 210  Q
    ||||||   | | | |||||| ||||||  |||||||||||| | || ||| ||||||||||||||||| ||||||||| |||| ||||||||||||||     
T  6143134 tgacgc---acaccgaaaggggaagataagacgctttctttctgcttttattaatcgatttgaatctagaattaaagtaatgctgaagaggctagagttc 6143038  T
Q  211 cttgcagatcaaaag 225  Q
    | ||||| |||||||    
T  6143037 cgtgcaggtcaaaag 6143023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 309 - 411
Target Start/End: Original strand, 6590747 - 6590849
Alignment:
Q  309 atctgtgatatatggtagagagcatgagaaagaagaaataattgaatttttactttcagacagtcacggttacaaccgggtatccataatcagtatagtg 408  Q
    |||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| || ||||||  ||| |||||||| ||||||||    
T  6590747 atctgtcatatatggtagagagcatgagaaagaggaaataattaaatttttactttcagacagtcacagtcacaaccatgtacccataatctgtatagtg 6590846  T
Q  409 ggt 411  Q
    |||    
T  6590847 ggt 6590849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 287 - 414
Target Start/End: Original strand, 13269985 - 13270112
Alignment:
Q  287 caactgcatctttggtggctgaatctgtgatatatggtagagagcatgagaaagaagaaataattgaatttttactttcagacagtcacggttacaaccg 386  Q
    |||||| ||||||||| | ||||||| |||||  ||||||||||||||||||||| |||||||| || ||| |||||||||||||  | |||  ||||||    
T  13269985 caactgtatctttggttgatgaatctctgatacttggtagagagcatgagaaagaggaaataatcgattttatactttcagacagggatggtgtcaaccg 13270084  T
Q  387 ggtatccataatcagtatagtgggtctg 414  Q
    |||| |||||||||||||||||||||||    
T  13270085 ggtacccataatcagtatagtgggtctg 13270112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 10 - 225
Target Start/End: Original strand, 13269705 - 13269917
Alignment:
Q  10 gcagagacaaagaagtacgagaatcaaaacgtgaagaattgggttgatgatgcgagtaatgaggtatacgaattagatcaactattggacatcattgcta 109  Q
    |||||||| ||| ||||| | ||||||  |||| |||||||| |||||||||  ||||||||||||||||||||||| |||||||||||  | |||| ||    
T  13269705 gcagagactaagcagtaccaaaatcaacgcgtggagaattggcttgatgatgtcagtaatgaggtatacgaattagagcaactattggatgtgattgtta 13269804  T
Q  110 gtgacgctgcaaaacaaaagggaaagatacaacgctttctttcaggttctatcaatcgatttgaatctaggattaaagtattgctcaagaggctagagtt 209  Q
     ||||   ||| ||| |||||| ||||||   || |||||||| | || ||| ||||||||||||||||| |||||||  | |||  ||||||||| |||    
T  13269805 ctgac---gcacaacgaaaggggaagataagtcgttttctttctgcttttattaatcgatttgaatctagaattaaagcttcgctggagaggctagtgtt 13269901  T
Q  210 tcttgcagatcaaaag 225  Q
    ||||||||||| ||||    
T  13269902 tcttgcagatctaaag 13269917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 294 - 427
Target Start/End: Original strand, 6721467 - 6721600
Alignment:
Q  294 atctttggtggctgaatctgtgatatatggtagagagcatgagaaagaagaaataattgaatttttactttcagacagtcacggttacaaccgggtatcc 393  Q
    ||||||||||| |||||| || ||||||||| |||||||||||||||||||||||||  | || || ||||| || ||| || || |||||| |||  ||    
T  6721467 atctttggtggatgaatcggtcatatatggtcgagagcatgagaaagaagaaataatcaatttcttgctttctgatagtgacagtgacaaccaggtgccc 6721566  T
Q  394 ataatcagtatagtgggtctggacgggataggta 427  Q
    |||||||||||||||||||||   ||||||||||    
T  6721567 ataatcagtatagtgggtctgattgggataggta 6721600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 316 - 413
Target Start/End: Complemental strand, 6917735 - 6917632
Alignment:
Q  316 atatatggtagagagcatgagaaagaagaaataattgaatttttactttcagacagtcac------ggttacaaccgggtatccataatcagtatagtgg 409  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||      | | ||||||||||| |||||||||||||||| |    
T  6917735 atatatggtagagagcatgagaaagaggaaataattgaatttttactatcagacagtgacagtgatgctgacaaccgggtacccataatcagtatagttg 6917636  T
Q  410 gtct 413  Q
    ||||    
T  6917635 gtct 6917632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 70 - 240
Target Start/End: Original strand, 6590523 - 6590693
Alignment:
Q  70 gaggtatacgaattagatcaactattggacatcattgctagtgacgctgcaaaacaaaagggaaagatacaacgctttctttcaggttctatcaatcga- 168  Q
    |||||||  |||||||| |||||||||||  | ||||||  ||||||   | ||| |||||| ||||||| ||||||||||||| ||| ||| ||||||     
T  6590523 gaggtatttgaattagagcaactattggatgtgattgctgatgacgc---acaaccaaagggcaagatacgacgctttctttcacgttttattaatcgag 6590619  T
Q  169 --tttgaatctaggattaaagtattgctcaagaggctagagtttcttgcagatcaaaagaatatattgggactt 240  Q
      |||||| |||||||||||| |||| |  |||  |||||||||||||||||||||||| ||| ||||||||||    
T  6590620 gatttgaagctaggattaaagcattgatacagaacctagagtttcttgcagatcaaaaggataaattgggactt 6590693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 306 - 414
Target Start/End: Complemental strand, 6883145 - 6883037
Alignment:
Q  306 tgaatctgtgatatatggtagagagcatgagaaagaagaaataattgaatttttactttcagacagtcacggttacaaccgggtatccataatcagtata 405  Q
    ||||||||| ||  |||||||||||||||||||||| ||| ||||| ||||||||||||| |||| |||| || ||||||  | | ||||||| ||||||    
T  6883145 tgaatctgtcatgaatggtagagagcatgagaaagaggaattaattaaatttttactttctgacattcacagtgacaaccttgcacccataattagtata 6883046  T
Q  406 gtgggtctg 414  Q
    |||||||||    
T  6883045 gtgggtctg 6883037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 6900873 - 6900818
Alignment:
Q  168 atttgaatctaggattaaagtattgctcaagaggctagagtttcttgcagatcaaa 223  Q
    ||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||    
T  6900873 atttgaatctaggattaaagtattgctgaagaggctaaagtttattgcagatcaaa 6900818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 287 - 413
Target Start/End: Complemental strand, 6142949 - 6142817
Alignment:
Q  287 caactgcatctttggtggctgaatctgtgatatatggtagagagcatgagaaagaagaaataattgaatttttactttcagac------agtcacggtta 380  Q
    |||||| ||||||| | | ||||||||| |||||||||||| | |||||||||||  |||| ||| | ||||||||| |||||      ||| ||||| |    
T  6142949 caactgtatctttgattgatgaatctgtcatatatggtagataccatgagaaagagaaaatgattaattttttacttacagacagtgaaagtgacggtga 6142850  T
Q  381 caaccgggtatccataatcagtatagtgggtct 413  Q
    |||||||||| |||||||||||||||| |||||    
T  6142849 caaccgggtacccataatcagtatagtaggtct 6142817  T

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Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 294 - 350
Target Start/End: Original strand, 6850140 - 6850196
Alignment:
Q  294 atctttggtggctgaatctgtgatatatggtagagagcatgagaaagaagaaataat 350  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||| || |||||    
T  6850140 atcttaggtggatgaatctgtgatatatggtagagagcatgagaaagaggatataat 6850196  T

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Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 287 - 411
Target Start/End: Complemental strand, 7750659 - 7750535
Alignment:
Q  287 caactgcatctttggtggctgaatctgtgatatatggtagagagcatgagaaagaagaaataattgaatttttactttcagacagtcacggttacaaccg 386  Q
    |||||||| ||||| ||| | |||||| | | |||||||| |||||||||| ||| ||||| | |||||||||||||||||||||| || || | | |      
T  7750659 caactgcacctttgatggataaatctgcggtgtatggtagggagcatgagatagaggaaatgactgaatttttactttcagacagttacagtgaaacctt 7750560  T
Q  387 ggtatccataatcagtatagtgggt 411  Q
     ||| ||||||||||||||||||||    
T  7750559 tgtacccataatcagtatagtgggt 7750535  T

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Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 73 - 192
Target Start/End: Complemental strand, 6883390 - 6883274
Alignment:
Q  73 gtatacgaattagatcaactattggacatcattgctagtgacgctgcaaaacaaaagggaaagatacaacgctttctttcaggttctatcaatcgatttg 172  Q
    ||||||||||||||||||||||||||  | ||||| | ||||||   | |||||| ||| |||||||||||| |||||||||||| ||| |||| || |     
T  6883390 gtatacgaattagatcaactattggatgtgattgcgactgacgc---acaacaaatgggcaagatacaacgcattctttcaggttttattaatcaatgtc 6883294  T
Q  173 aatctaggattaaagtattg 192  Q
    ||| ||||||  ||||||||    
T  6883293 aatataggatggaagtattg 6883274  T

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Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 166 - 242
Target Start/End: Original strand, 6850046 - 6850122
Alignment:
Q  166 cgatttgaatctaggattaaagtattgctcaagaggctagagtttcttgcagatcaaaagaatatattgggacttca 242  Q
    ||||| |||||||||| |||||||||||| | |||| ||||||| ||||||| | ||| | ||||||||||||||||    
T  6850046 cgattggaatctaggagtaaagtattgctgaggaggttagagttccttgcagctgaaagggatatattgggacttca 6850122  T

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Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 306 - 411
Target Start/End: Complemental strand, 6900729 - 6900624
Alignment:
Q  306 tgaatctgtgatatatggtagagagcatgagaaagaagaaataattgaatttttactttcagacagtcacggttacaaccgggtatccataatcagtata 405  Q
    ||||||| | ||||||| |||||||| ||||||| | |||||||| || | ||||||||| |||||| || ||  |||||  ||| ||||||||||| ||    
T  6900729 tgaatctttcatatatgatagagagcttgagaaatacgaaataatcgactatttactttccgacagtgacagtcgcaaccaagtacccataatcagtgta 6900630  T
Q  406 gtgggt 411  Q
    ||||||    
T  6900629 gtgggt 6900624  T

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Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 230
Target Start/End: Complemental strand, 5250940 - 5250873
Alignment:
Q  163 aatcgatttgaatctaggattaaagtattgctcaagaggctagagtttcttgcagatcaaaagaatat 230  Q
    |||| |||||||||||||||||||| ||||||  ||| |||||| ||||||||| | |||||| ||||    
T  5250940 aatccatttgaatctaggattaaagaattgctagagaagctagaatttcttgcaaagcaaaaggatat 5250873  T

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Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 187
Target Start/End: Original strand, 8568172 - 8568233
Alignment:
Q  126 aaagggaaagatacaacgctttctttcaggttctatcaatcgatttgaatctaggattaaag 187  Q
    |||||||||||  |||| ||| |||||||||| ||  |||||||||||||||||||| ||||    
T  8568172 aaagggaaagacgcaacacttcctttcaggttttactaatcgatttgaatctaggatcaaag 8568233  T

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Target: scaffold0425 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 166 - 242
Target Start/End: Original strand, 13154 - 13230
Alignment:
Q  166 cgatttgaatctaggattaaagtattgctcaagaggctagagtttcttgcagatcaaaagaatatattgggacttca 242  Q
    ||||| |||||||||| |||||||||||| | |||| ||||||| ||||||||||||||| ||||||||||||||||    
T  13154 cgattggaatctaggagtaaagtattgctgaggaggttagagttccttgcagatcaaaaggatatattgggacttca 13230  T

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Target: scaffold0425; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 288 - 350
Target Start/End: Original strand, 13242 - 13304
Alignment:
Q  288 aactgcatctttggtggctgaatctgtgatatatggtagagagcatgagaaagaagaaataat 350  Q
    ||||| ||||| ||||| |||||||||||||||||||||||||||||||||||| || |||||    
T  13242 aactgtatcttaggtggatgaatctgtgatatatggtagagagcatgagaaagaggatataat 13304  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 350
Target Start/End: Original strand, 6572695 - 6572758
Alignment:
Q  287 caactgcatctttggtggctgaatctgtgatatatggtagagagcatgagaaagaagaaataat 350  Q
    ||||||||||| |||||| | |||||   |||||||||||||||  ||||||||||||||||||    
T  6572695 caactgcatctctggtggataaatcttgcatatatggtagagagggtgagaaagaagaaataat 6572758  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 369
Target Start/End: Original strand, 35139809 - 35139876
Alignment:
Q  302 tggctgaatctgtgatatatggtagagagcatgagaaagaagaaataattgaatttttactttcagac 369  Q
    ||||||||||| | |||||||||||||| | ||| ||||| ||||||||  |||||||| ||||||||    
T  35139809 tggctgaatctatcatatatggtagagaacgtgaaaaagaggaaataatcaaatttttattttcagac 35139876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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