View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9664_low_8 (Length: 438)
Name: NF9664_low_8
Description: NF9664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9664_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 420
Target Start/End: Complemental strand, 35770353 - 35769934
Alignment:
| Q |
1 |
ggatttatggcgacagacagagaagtaattcataacatctgctaatagtaaaatcttctgaaacatgtgaaagagtttgctagaaggttgatgtatagtc |
100 |
Q |
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| T |
35770353 |
ggatttatggcgacagacagagaagtaattcataacatctgctaacagtaaaatcttctgaaacatgtgaaagagtttgctagaaggttgatgtatagtc |
35770254 |
T |
|
| Q |
101 |
attatgacagttcttccacctttagctaactcacacaaattcatcacaattctctttgctgtggttgaatcaagacctttagtaggctcatcaacaagca |
200 |
Q |
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| T |
35770253 |
attatgacagttcttccacctttagctaactcacacaaattcatcacaattctctttgctgtggttgaatcaagacatttagtaggctcatcaacaagca |
35770154 |
T |
|
| Q |
201 |
atagacttgaattagttgacagctcttgtcctatactaactctcttccattctccacctgaaacacctattagaagtggacctcccattatagtatcctt |
300 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35770153 |
atagacttgaattagttaacagctcttgtcctatactaactctcttccattctccacctgaaacacctattagaagtggacctcccattatagtatcctt |
35770054 |
T |
|
| Q |
301 |
acaatgattcaaatcaagctaacccataacttttttaacacttgagattttcccttttgagagactattcggaaaccgaagaagagacgaaaagattagt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
35770053 |
acaatgattcaaatcaagctaacccataacttttttaacacttgagattttccctttagagagactattcggaaatcgaagaagagacgaaaagactagt |
35769954 |
T |
|
| Q |
401 |
gtctcacagactgataggtg |
420 |
Q |
| |
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|||||||||||||||||||| |
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| T |
35769953 |
gtctcacagactgataggtg |
35769934 |
T |
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