View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9665_high_4 (Length: 319)
Name: NF9665_high_4
Description: NF9665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9665_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 1729401 - 1729639
Alignment:
| Q |
1 |
aaatagatcttaaataaacaatatgaatgcatccatttcctacaacaattcaccaaacacacgataaattaaacatttgtttagattacaagttttttag |
100 |
Q |
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| T |
1729401 |
aaatagatcttaaataaacaatgtgaatgcatccatttcctacaacaattcaccaaacacacgataaattaaacatttgtttagatttcaaattttttag |
1729500 |
T |
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| Q |
101 |
tgtcaatgtttaaatattgagatttccggtgacagtgcactgaaagtgatgccacaacatttttcaaacagacaaggtaaacaaattggatcacctacaa |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1729501 |
tgtcaatgtttaaatattgagacttccggtgacagtgcactgaaagtgatgccacaacatttttcaaacagacaaggtaaacaaattggatcacctacaa |
1729600 |
T |
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| Q |
201 |
ttatggtgcatttgcggccataagaaacaaaagaatgta |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
1729601 |
ttatggtgcatttgcggccataagaaacaaaagaatgta |
1729639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 245 - 304
Target Start/End: Original strand, 1729684 - 1729744
Alignment:
| Q |
245 |
agagaaatttcctacattaattgtgtcatacacaattttctt-aaaaaatatgagtcacac |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
1729684 |
agagaaatttcctacattaattgtgtcatacacaattttcttaaaaaaatacgagtcacac |
1729744 |
T |
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