View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9665_high_5 (Length: 305)
Name: NF9665_high_5
Description: NF9665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9665_high_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 6884814 - 6885086
Alignment:
| Q |
1 |
agaaaccacaattgaaatgaacacacacttgtgctcacaaactatcccatcattatacttttgatgttgcaaaggatatggggattcttgaggcaagttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6884814 |
agaaaccacaattgaaatgaacacacacttgtgctcacaaattatcccatcattatacttttgatgttgcaaaggatatggggattcttgaggcaagttt |
6884913 |
T |
|
| Q |
101 |
ggcatgagcatctccagtagtcattacttgaggtattgacatgccaccagatataacaatttctgtaacaacacatgagaacaaaaattattaaccaaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
6884914 |
ggcatgagcatctccagtagtcattacttgaggtattgacatgccaccagatataacaatttctgtatcaacacatgagaacaaaaattattaacgaaaa |
6885013 |
T |
|
| Q |
201 |
tcgaaaaactttggtgggaataacaatacaaaattattaaccagatataacaattttaatacaaaagttttgt |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6885014 |
tcgaaaaactttggtgggaataacaatacaaaattattaaccagatataacaattttaatacaaaagttttgt |
6885086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University