View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9665_low_12 (Length: 297)

Name: NF9665_low_12
Description: NF9665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9665_low_12
NF9665_low_12
[»] chr1 (6 HSPs)
chr1 (10-281)||(9070903-9071171)
chr1 (54-281)||(8862765-8862986)
chr1 (57-182)||(9087308-9087427)
chr1 (24-182)||(8866730-8866882)
chr1 (57-148)||(9126479-9126561)
chr1 (232-284)||(9109065-9109116)


Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 10 - 281
Target Start/End: Complemental strand, 9071171 - 9070903
Alignment:
Q  10 gcagagaatcatattgtggacctgaccaacctcttattaaatttcccttccaaatcgttaaggaatcatcacaagatcaacaatgtgtttatcctaaaga 109  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  9071171 gcagagaatcatattgtggacctaaccaacctcttattaaatttcccttccaaatcgttaaggaatcatcacaagatcaa---tgtgtttatcctaaaga 9071075  T
Q  110 gttctgcctatattgtactgaaaataagaaaaccatgatagttctctctacctcttcaggtccaatcaaattccatgtctctgatattgactacgaatca 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9071074 gttctgcctatattgtactgaaaataagaaaaccatgatagttctctctacctcttcaggtccaatcaaattccatgtctctgatattgactacgaatca 9070975  T
Q  210 cactcgatgtcaatatcagacccagacaattgccttccaaaaaagtttttgatactcaacaattcatcattt 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9070974 cactcgatgtcaatatcagacccagacaattgccttccaaaaaagtttttgatactcaacaattcatcattt 9070903  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 54 - 281
Target Start/End: Complemental strand, 8862986 - 8862765
Alignment:
Q  54 cccttccaaatcgttaaggaatcatcacaagatcaacaatgtgtttatcctaaagagttctgcctatattgtactgaaaataagaaaaccatgatagttc 153  Q
    ||||||||| | ||| ||||||||||||||||||||   |||  | |||||   ||||| |||||||||||||||||||| ||| |||||||||| || |    
T  8862986 cccttccaactagttgaggaatcatcacaagatcaa---tgtactcatcct---gagttttgcctatattgtactgaaaacaaggaaaccatgatggtcc 8862893  T
Q  154 tctctacctcttcaggtccaatcaaattccatgtctctgatattgactacgaatcacactcgatgtcaatatcagacccagacaattgccttccaaaaaa 253  Q
    |||||||| ||||||||||||||||||||| ||| | | | || |||||||||||| ||   || ||| |    ||||| ||||||||| |||| |||||    
T  8862892 tctctaccacttcaggtccaatcaaattccgtgtatattacatagactacgaatcaaaccgaatttcagtgatggacccggacaattgcattcctaaaaa 8862793  T
Q  254 gtttttgatactcaacaattcatcattt 281  Q
    |||| ||| ||| ||||| |||||||||    
T  8862792 gtttctgaaacttaacaactcatcattt 8862765  T

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Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 57 - 182
Target Start/End: Complemental strand, 9087427 - 9087308
Alignment:
Q  57 ttccaaatcgttaaggaatcatcacaagatcaacaatgtgtttatcctaaagagttctgcctatattgtactgaaaataagaaaaccatgatagttctct 156  Q
    |||||| ||||||||||||||||||||||||||   ||||||||||||   ||||| ||| ||||||||||| ||||||||| ||||||||| || ||||    
T  9087427 ttccaactcgttaaggaatcatcacaagatcaa---tgtgtttatcct---gagttttgcttatattgtactaaaaataagagaaccatgattgtgctct 9087334  T
Q  157 ctacctcttcaggtccaatcaaattc 182  Q
    || ||  |||||||||||||||||||    
T  9087333 cttccaattcaggtccaatcaaattc 9087308  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 182
Target Start/End: Complemental strand, 8866882 - 8866730
Alignment:
Q  24 tgtggacctgaccaacctcttattaaatttcccttccaaatcgttaaggaatcatcacaagatcaacaatgtgtttatcctaaagagttctgcctatatt 123  Q
    ||||||||| || ||||  |||||  ||| ||||||||| | |||||||||||||||||| || ||   ||||||||||||   ||||| ||||||||||    
T  8866882 tgtggaccttacgaaccgattattcgattccccttccaacttgttaaggaatcatcacaacatgaa---tgtgtttatcct---gagttttgcctatatt 8866789  T
Q  124 gtactgaaaataagaaaaccatgatagttctctctacctcttcaggtccaatcaaattc 182  Q
    ||||| |||| ||||| |||||||| ||  | |||||| ||||||||||| ||| ||||    
T  8866788 gtactcaaaacaagaacaccatgatggtgttatctaccacttcaggtccattcatattc 8866730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 148
Target Start/End: Complemental strand, 9126561 - 9126479
Alignment:
Q  57 ttccaaatcgttaaggaatcatcacaagatcaacaatgtgtttatcctaaagagttctgcctatattgtactgaaaataagaaaaccatgat 148  Q
    |||||| |||||||||||||||||||||||   |||||||||||||||   ||||| ||||| ||||||||   |||| |||||||||||||    
T  9126561 ttccaactcgttaaggaatcatcacaagat---caatgtgtttatcct---gagttttgcctgtattgtac---aaatcagaaaaccatgat 9126479  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 284
Target Start/End: Complemental strand, 9109116 - 9109065
Alignment:
Q  232 cagacaattgccttccaaaaaagtttttgatactcaacaattcatcattttga 284  Q
    ||||||||||||||| ||||| |||||| || ||||||| |||||||||||||    
T  9109116 cagacaattgccttcaaaaaatgttttt-atgctcaacagttcatcattttga 9109065  T

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