View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9665_low_14 (Length: 271)
Name: NF9665_low_14
Description: NF9665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9665_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 13 - 249
Target Start/End: Original strand, 10209822 - 10210058
Alignment:
| Q |
13 |
gtttggtgttgggtgggatgtcggagagggtgaccggagggaggaagacgtgggaaatgccattaggtagggaggtgagtacggtggtttgagcctttga |
112 |
Q |
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| T |
10209822 |
gtttggtgttgggtgggaggtcggagagggtgaccggagggaggaagacgtgggaaatgccatgaggtagggaggtgagtacggttgtttgagcctttga |
10209921 |
T |
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| Q |
113 |
aggtggaccgtcgttggggatgatgaaggtgatgggaaggttatgtttggagagtctcttggcgaattcgaccattggaatgagatgtcccattcctgga |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10209922 |
aggtggaccgtcgttggggatgatgaaggtgatgggaaggttatgtttggagagtctcttggcgaattcgaccattggaatgagatgtcccattcctgga |
10210021 |
T |
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| Q |
213 |
gttggaaacatggctactagaggtggtagttcttgtt |
249 |
Q |
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| T |
10210022 |
gttggaaacatggctactagaggtggtagttcttgtt |
10210058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 13 - 249
Target Start/End: Original strand, 10202749 - 10202985
Alignment:
| Q |
13 |
gtttggtgttgggtgggatgtcggagagggtgaccggagggaggaagacgtgggaaatgccattaggtagggaggtgagtacggtggtttgagcctttga |
112 |
Q |
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|||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
10202749 |
gtttggtgttgggtgggaggtcggagagggtgatcggaggaaggaagacgtgggaaatgccatgaggtagggaggtgagtacggtggtttgagcctttga |
10202848 |
T |
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| Q |
113 |
aggtggaccgtcgttggggatgatgaaggtgatgggaaggttatgtttggagagtctcttggcgaattcgaccattggaatgagatgtcccattcctgga |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10202849 |
aggtggaccgtcgttggggatgatgaaggtgatgggaaggttatgtttggagagtctcttggcgaattcgaccattggaatgagatgtcccattcctgga |
10202948 |
T |
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| Q |
213 |
gttggaaacatggctactagaggtggtagttcttgtt |
249 |
Q |
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| T |
10202949 |
gttggaaacatggctactagaggtggtagttcttgtt |
10202985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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