View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9665_low_15 (Length: 210)

Name: NF9665_low_15
Description: NF9665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9665_low_15
NF9665_low_15
[»] chr8 (2 HSPs)
chr8 (20-172)||(6245494-6245644)
chr8 (43-172)||(25193514-25193643)
[»] chr1 (11 HSPs)
chr1 (20-172)||(5808984-5809136)
chr1 (20-138)||(34352826-34352944)
chr1 (20-172)||(45795609-45795761)
chr1 (20-172)||(13867418-13867570)
chr1 (18-160)||(1248182-1248324)
chr1 (43-183)||(52691897-52692037)
chr1 (77-172)||(28358350-28358445)
chr1 (119-172)||(19014568-19014621)
chr1 (39-136)||(20987585-20987682)
chr1 (76-172)||(40563143-40563239)
chr1 (121-172)||(3544686-3544737)
[»] chr4 (2 HSPs)
chr4 (20-172)||(43516333-43516485)
chr4 (63-168)||(2071986-2072091)
[»] chr2 (3 HSPs)
chr2 (45-172)||(11196779-11196906)
chr2 (76-168)||(33583940-33584032)
chr2 (75-140)||(9006298-9006363)
[»] chr6 (5 HSPs)
chr6 (26-172)||(14686593-14686739)
chr6 (43-183)||(25350648-25350788)
chr6 (77-172)||(19350404-19350499)
chr6 (77-172)||(29976600-29976695)
chr6 (121-172)||(32186187-32186238)
[»] chr7 (5 HSPs)
chr7 (39-136)||(20349386-20349483)
chr7 (77-172)||(27218707-27218802)
chr7 (78-168)||(23887545-23887635)
chr7 (78-168)||(23898721-23898811)
chr7 (39-140)||(19545019-19545120)
[»] chr3 (4 HSPs)
chr3 (43-183)||(53941729-53941869)
chr3 (18-91)||(34829820-34829892)
chr3 (111-169)||(34829894-34829952)
chr3 (39-172)||(40513309-40513442)
[»] chr5 (3 HSPs)
chr5 (77-170)||(42259740-42259833)
chr5 (64-171)||(18896003-18896110)
chr5 (78-172)||(476674-476768)
[»] scaffold0043 (1 HSPs)
scaffold0043 (121-172)||(34194-34245)


Alignment Details
Target: chr8 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 20 - 172
Target Start/End: Original strand, 6245494 - 6245644
Alignment:
Q  20 acatctccaagccacatggcataccaaaagaaagtactaatgtcatcccccatctttttcgacaccctctctgcgaaccaacccccatctgcatcaccta 119  Q
    ||||| ||||||||| |  |||||||||||||||||||| || ||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||    
T  6245494 acatcaccaagccacctatcataccaaaagaaagtactagtgccatcccccacctttttcgacaccctct--gcgaaccaacccccatctgcatcaccta 6245591  T
Q  120 ccccatccctaatcttcactactccccgccaccaagatgaaacactccggccc 172  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  6245592 ccccatccctaatcttcactacttcccgccaccaagatgaaacactccggccc 6245644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 43 - 172
Target Start/End: Original strand, 25193514 - 25193643
Alignment:
Q  43 ccaaaagaaagtactaatgtcatcccccatctttttcgacaccctctctgcgaaccaacccccatctgcatcacctaccccatccctaatcttcactact 142  Q
    |||||| ||||||||| |  | ||||||| | |||| |||||||||||| | ||||||||||||||||  || |||| |||||||||||||||| |||      
T  25193514 ccaaaacaaagtactagttccgtcccccaccctttttgacaccctctctacaaaccaacccccatctgtgtctcctatcccatccctaatcttcgctatc 25193613  T
Q  143 ccccgccaccaagatgaaacactccggccc 172  Q
     ||| ||||||| | ||| |||||||||||    
T  25193614 tccctccaccaataagaatcactccggccc 25193643  T

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Target: chr1 (Bit Score: 109; Significance: 5e-55; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 20 - 172
Target Start/End: Original strand, 5808984 - 5809136
Alignment:
Q  20 acatctccaagccacatggcataccaaaagaaagtactaatgtcatcccccatctttttcgacaccctctctgcgaaccaacccccatctgcatcaccta 119  Q
    ||||| ||||||||| || ||||||||||||| ||||||||| || |||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  5808984 acatcaccaagccacctgtcataccaaaagaatgtactaatgccaccccccacctttttcgacaccctctctgcgaaccaacctccatctgcatcaccta 5809083  T
Q  120 ccccatccctaatcttcactactccccgccaccaagatgaaacactccggccc 172  Q
    ||||||||||||||||||||||| || ||||| ||||||||||||||||||||    
T  5809084 ccccatccctaatcttcactacttcctgccactaagatgaaacactccggccc 5809136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 20 - 138
Target Start/End: Original strand, 34352826 - 34352944
Alignment:
Q  20 acatctccaagccacatggcataccaaaagaaagtactaatgtcatcccccatctttttcgacaccctctctgcgaaccaacccccatctgcatcaccta 119  Q
    ||||| ||||||||| || |||| ||||||||||||||| ||  ||| || | ||||||||||||||||||||| ||||||||||| ||| |||| ||||    
T  34352826 acatcaccaagccacctgtcatatcaaaagaaagtactagtgcaatctcctacctttttcgacaccctctctgcaaaccaacccccctctacatcgccta 34352925  T
Q  120 ccccatccctaatcttcac 138  Q
    |||||||||||||||||||    
T  34352926 ccccatccctaatcttcac 34352944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 20 - 172
Target Start/End: Original strand, 45795609 - 45795761
Alignment:
Q  20 acatctccaagccacatggcataccaaaagaaagtactaatgtcatcccccatctttttcgacaccctctctgcgaaccaacccccatctgcatcaccta 119  Q
    ||||| || |||||| || ||||||||||| ||||||||  | |||| || |  || ||||||||||| ||| | ||||| ||||| ||| |||| ||||    
T  45795609 acatcacctagccacctgtcataccaaaagtaagtactagagccatctcctactttcttcgacaccctatctacaaaccagcccccctctacatcgccta 45795708  T
Q  120 ccccatccctaatcttcactactccccgccaccaagatgaaacactccggccc 172  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||| ||||    
T  45795709 ccccatccctaatcttcgctacttcccgccaccaagatgaaacactcctgccc 45795761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 20 - 172
Target Start/End: Complemental strand, 13867570 - 13867418
Alignment:
Q  20 acatctccaagccacatggcataccaaaagaaagtactaatgtcatcccccatctttttcgacaccctctctgcgaaccaacccccatctgcatcaccta 119  Q
    ||||| ||||||||| || ||||||||||| ||||||||    |||| || |  || ||||||||||||||||| ||||| ||||| ||| |||| ||||    
T  13867570 acatcaccaagccacctgtcataccaaaagtaagtactagaaccatctcctactttcttcgacaccctctctgcaaaccagcccccctctacatcgccta 13867471  T
Q  120 ccccatccctaatcttcactactccccgccaccaagatgaaacactccggccc 172  Q
    ||||||||||||||||  ||| |   |||||||| ||||||||||||| ||||    
T  13867470 ccccatccctaatctttgctatttttcgccaccacgatgaaacactcctgccc 13867418  T

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Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 160
Target Start/End: Complemental strand, 1248324 - 1248182
Alignment:
Q  18 ggacatctccaagccacatggcataccaaaagaaagtactaatgtcatcccccatctttttcgacaccctctctgcgaaccaacccccatctgcatcacc 117  Q
    ||||||| ||||||||| || ||||||||||| |||||   | | ||| ||| | | | ||||||||||||||  | ||||||| |||  | || |||||    
T  1248324 ggacatcaccaagccacctgtcataccaaaagtaagtagccaagccattccctaccctcttcgacaccctctcctcaaaccaactccccgcagcttcacc 1248225  T
Q  118 taccccatccctaatcttcactactccccgccaccaagatgaa 160  Q
     |||||||||||||||||||||||| ||| |||||||||||||    
T  1248224 caccccatccctaatcttcactacttccctccaccaagatgaa 1248182  T

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Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 183
Target Start/End: Original strand, 52691897 - 52692037
Alignment:
Q  43 ccaaaagaaagtactaatgtcatcccccatctttttcgacaccctctctgcgaaccaacccccatctgcatcacctaccccatccctaatcttcactact 142  Q
    |||||| ||||||||| |  | ||||||| | ||||||||||||||||||| |||||||||||||  |  || ||||  |||||| |||||||| |||      
T  52691897 ccaaaacaaagtactagttccgtcccccacccttttcgacaccctctctgcaaaccaacccccattcgtgtctcctattccatccttaatcttcgctatc 52691996  T
Q  143 ccccgccaccaagatgaaacactccggccctcgaccaccaa 183  Q
     ||| ||||||||| ||| ||||||| ||||| ||||||||    
T  52691997 tccctccaccaagaagaatcactccgaccctctaccaccaa 52692037  T

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Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 77 - 172
Target Start/End: Original strand, 28358350 - 28358445
Alignment:
Q  77 ttcgacaccctctctgcgaaccaacccccatctgcatcacctaccccatccctaatcttcactactccccgccaccaagatgaaacactccggccc 172  Q
    |||||||||||| |||| ||||| |||||| |  | || |||||  |||||||||||||| ||||| ||| |||||||||||| ||||||||||||    
T  28358350 ttcgacaccctccctgcaaaccagcccccaccaacctctcctactacatccctaatcttcgctacttccctccaccaagatgagacactccggccc 28358445  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 172
Target Start/End: Complemental strand, 19014621 - 19014568
Alignment:
Q  119 accccatccctaatcttcactactccccgccaccaagatgaaacactccggccc 172  Q
    ||||||||||||||||||||||   ||| ||||||||| |||||||||||||||    
T  19014621 accccatccctaatcttcactatctccctccaccaagaagaaacactccggccc 19014568  T

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Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 136
Target Start/End: Original strand, 20987585 - 20987682
Alignment:
Q  39 cataccaaaagaaagtactaatgtcatcccccatctttttcgacaccctctctgcgaaccaacccccatctgcatcacctaccccatccctaatcttc 136  Q
    |||||||||| ||||||||| |  ||||||||  | ||||||||||| ||||||| ||||||| | | || | ||| |||| ||||||||||||||||    
T  20987585 cataccaaaataaagtactagttccatccccctcccttttcgacaccttctctgcaaaccaactctcctcagaatcgcctatcccatccctaatcttc 20987682  T

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Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 172
Target Start/End: Complemental strand, 40563239 - 40563143
Alignment:
Q  76 tttcgacaccctctctgcgaaccaacccccatctgcatcacctaccccatccctaatcttcactactccccgccaccaagatgaaacactccggccc 172  Q
    |||||| ||||||||| | ||||| |||||||| |  ||||| || ||||||||||||||| |||   | | |||||||||||||||| ||||||||    
T  40563239 tttcgataccctctctacaaaccagcccccatcagtctcacccactccatccctaatcttcgctatctctctccaccaagatgaaacagtccggccc 40563143  T

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Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 172
Target Start/End: Complemental strand, 3544737 - 3544686
Alignment:
Q  121 cccatccctaatcttcactactccccgccaccaagatgaaacactccggccc 172  Q
    |||||||||||||||||||||| ||  |||||||||||||  ||||||||||    
T  3544737 cccatccctaatcttcactacttccttccaccaagatgaagtactccggccc 3544686  T

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Target: chr4 (Bit Score: 77; Significance: 6e-36; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 20 - 172
Target Start/End: Complemental strand, 43516485 - 43516333
Alignment:
Q  20 acatctccaagccacatggcataccaaaagaaagtactaatgtcatcccccatctttttcgacaccctctctgcgaaccaacccccatctgcatcaccta 119  Q
    ||||| ||||||||| || ||||||||||| ||||||||  | |||| || |  |||||||||||||||||||| ||||| ||||| ||| |||| ||||    
T  43516485 acatcaccaagccacttgtcataccaaaagtaagtactagagccatctcctacttttttcgacaccctctctgcaaaccagcccccctctacatcgccta 43516386  T
Q  120 ccccatccctaatcttcactactccccgccaccaagatgaaacactccggccc 172  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||| ||||    
T  43516385 ccccatccctaatcttcgctacttcccgccaccaagatgaaacactcctgccc 43516333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 63 - 168
Target Start/End: Original strand, 2071986 - 2072091
Alignment:
Q  63 catcccccatctttttcgacaccctctctgcgaaccaacccccatctgcatcacctaccccatccctaatcttcactactccccgccaccaagatgaaac 162  Q
    ||||||| | |||| |||||||||||||||| ||||| ||||| || || ||||||||||| ||||||||||||||||   ||| ||||||  | |||||    
T  2071986 catcccctacctttctcgacaccctctctgcaaaccagcccccctcggcctcacctaccccgtccctaatcttcactaactccctccaccagcaagaaac 2072085  T
Q  163 actccg 168  Q
    ||||||    
T  2072086 actccg 2072091  T

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Target: chr2 (Bit Score: 72; Significance: 6e-33; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 45 - 172
Target Start/End: Original strand, 11196779 - 11196906
Alignment:
Q  45 aaaagaaagtactaatgtcatcccccatctttttcgacaccctctctgcgaaccaacccccatctgcatcacctaccccatccctaatcttcactactcc 144  Q
    |||||||||||||| || ||||||| | ||||||||| ||||||| ||| |||||||| || ||| |||| ||||||||||||||||||||  ||||| |    
T  11196779 aaaagaaagtactagtgccatcccctacctttttcgataccctctgtgcaaaccaaccaccctctacatcgcctaccccatccctaatcttagctacttc 11196878  T
Q  145 ccgccaccaagatgaaacactccggccc 172  Q
    ||||||||||||||||||||||||||||    
T  11196879 ccgccaccaagatgaaacactccggccc 11196906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 168
Target Start/End: Complemental strand, 33584032 - 33583940
Alignment:
Q  76 tttcgacaccctctctgcgaaccaacccccatctgcatcacctaccccatccctaatcttcactactccccgccaccaagatgaaacactccg 168  Q
    |||||||||||||||||| ||||| ||||| ||  | ||| |||||||||||||||||||| |||   ||| ||||||||| |||||||||||    
T  33584032 tttcgacaccctctctgcaaaccagcccccgtcaacttcagctaccccatccctaatcttcgctatctccctccaccaagaagaaacactccg 33583940  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 140
Target Start/End: Original strand, 9006298 - 9006363
Alignment:
Q  75 ttttcgacaccctctctgcgaaccaacccccatctgcatcacctaccccatccctaatcttcacta 140  Q
    |||||||||||||||| |||||||| |||||||| ||||| |||| ||  ||||||||||||||||    
T  9006298 ttttcgacaccctctcagcgaaccatcccccatcagcatctcctaacctgtccctaatcttcacta 9006363  T

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Target: chr6 (Bit Score: 67; Significance: 6e-30; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 26 - 172
Target Start/End: Complemental strand, 14686739 - 14686593
Alignment:
Q  26 ccaagccacatggcataccaaaagaaagtactaatgtcatcccccatctttttcgacaccctctctgcgaaccaacccccatctgcatcacctaccccat 125  Q
    ||||||||| || ||||||||||| |||| ||| |  | |||||||||||||| |||| ||||||||| |||||||||||  || | |||||||| ||||    
T  14686739 ccaagccacctgtcataccaaaagtaagtgctagttccgtcccccatcttttttgacaacctctctgcaaaccaaccccctcctacctcacctacaccat 14686640  T
Q  126 ccctaatcttcactactccccgccaccaagatgaaacactccggccc 172  Q
    ||||||||||| ||||| | | |||||||||||||||||||||||||    
T  14686639 ccctaatcttcgctacttctctccaccaagatgaaacactccggccc 14686593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 183
Target Start/End: Original strand, 25350648 - 25350788
Alignment:
Q  43 ccaaaagaaagtactaatgtcatcccccatctttttcgacaccctctctgcgaaccaacccccatctgcatcacctaccccatccctaatcttcactact 142  Q
    |||||| ||||||||| |  | ||||||| | ||||||||||||||||||| |||||||||||||| |  || ||||  ||||||||||||||| |||      
T  25350648 ccaaaacaaagtactagttccgtcccccacccttttcgacaccctctctgcaaaccaacccccatccgtgtctcctattccatccctaatcttcgctatc 25350747  T
Q  143 ccccgccaccaagatgaaacactccggccctcgaccaccaa 183  Q
     ||| | ||||| | ||| ||||||||||| | ||||||||    
T  25350748 tccctcaaccaaaaagaatcactccggccccctaccaccaa 25350788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 77 - 172
Target Start/End: Original strand, 19350404 - 19350499
Alignment:
Q  77 ttcgacaccctctctgcgaaccaacccccatctgcatcacctaccccatccctaatcttcactactccccgccaccaagatgaaacactccggccc 172  Q
    |||||||||||| |||| ||||| ||||||||  | || ||||| ||||||||||||||| ||||  ||  |||||||||||| ||||||||||||    
T  19350404 ttcgacaccctccctgcaaaccatcccccatcatcctctcctactccatccctaatcttcgctacctccttccaccaagatgatacactccggccc 19350499  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 77 - 172
Target Start/End: Complemental strand, 29976695 - 29976600
Alignment:
Q  77 ttcgacaccctctctgcgaaccaacccccatctgcatcacctaccccatccctaatcttcactactccccgccaccaagatgaaacactccggccc 172  Q
    |||||||||||| |||| ||||| ||||||||  | || ||||| ||||||||||||||| ||||  ||  |||||||||||| ||||||||||||    
T  29976695 ttcgacaccctccctgcaaaccatcccccatcatcctctcctactccatccctaatcttcgctacctccttccaccaagatgatacactccggccc 29976600  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 172
Target Start/End: Original strand, 32186187 - 32186238
Alignment:
Q  121 cccatccctaatcttcactactccccgccaccaagatgaaacactccggccc 172  Q
    |||||||||||||||||||||  ||| ||||||||| ||| |||||||||||    
T  32186187 cccatccctaatcttcactacctccctccaccaagaagaagcactccggccc 32186238  T

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Target: chr7 (Bit Score: 54; Significance: 3e-22; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 39 - 136
Target Start/End: Original strand, 20349386 - 20349483
Alignment:
Q  39 cataccaaaagaaagtactaatgtcatcccccatctttttcgacaccctctctgcgaaccaacccccatctgcatcacctaccccatccctaatcttc 136  Q
    |||||||||||||||||||| |  ||||||||| ||||||||||||||||||||| ||||||||| | || | ||| |||| ||||||||||||||||    
T  20349386 cataccaaaagaaagtactagttacatcccccacctttttcgacaccctctctgcaaaccaaccctcctcagaatcgcctatcccatccctaatcttc 20349483  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 172
Target Start/End: Complemental strand, 27218802 - 27218707
Alignment:
Q  77 ttcgacaccctctctgcgaaccaacccccatctgcatcacctaccccatccctaatcttcactactccccgccaccaagatgaaacactccggccc 172  Q
    |||||||||||| |||  ||||| ||||||||  | || ||||| ||||||||||||||| ||||  ||  |||||||||||| ||||||||||||    
T  27218802 ttcgacaccctccctgaaaaccatcccccatcatcctctcctactccatccctaatcttcgctacctccttccaccaagatgatacactccggccc 27218707  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 78 - 168
Target Start/End: Original strand, 23887545 - 23887635
Alignment:
Q  78 tcgacaccctctctgcgaaccaacccccatctgcatcacctaccccatccctaatcttcactactccccgccaccaagatgaaacactccg 168  Q
    |||||||||| ||||  ||||| ||||||||| | || |||| |||||||||||||||| |||   ||| ||||||||| |||||||||||    
T  23887545 tcgacaccctatctgtaaaccatcccccatctacttctcctaacccatccctaatcttcgctatctccctccaccaagaagaaacactccg 23887635  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 78 - 168
Target Start/End: Original strand, 23898721 - 23898811
Alignment:
Q  78 tcgacaccctctctgcgaaccaacccccatctgcatcacctaccccatccctaatcttcactactccccgccaccaagatgaaacactccg 168  Q
    |||||||||| ||||  ||||| ||||||||| | || |||| |||||||||||||||| |||   ||| ||||||||| |||||||||||    
T  23898721 tcgacaccctatctgtaaaccatcccccatctacttctcctaacccatccctaatcttcgctatctccctccaccaagaagaaacactccg 23898811  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 140
Target Start/End: Complemental strand, 19545120 - 19545019
Alignment:
Q  39 cataccaaaagaaagtactaatgtcatcccccatctttttcgacaccctctctgcgaaccaacccccatctgcatcacctaccccatccctaatcttcac 138  Q
    ||||||||||||||||||||    |||| ||||   |||||||||||||||| || ||||||||| |||| ||| | |||| | | ||||||||||||||    
T  19545120 cataccaaaagaaagtactagaaccatctcccactcttttcgacaccctctcagcaaaccaaccctcatcagcaactcctaactcgtccctaatcttcac 19545021  T
Q  139 ta 140  Q
    ||    
T  19545020 ta 19545019  T

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Target: chr3 (Bit Score: 45; Significance: 8e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 43 - 183
Target Start/End: Original strand, 53941729 - 53941869
Alignment:
Q  43 ccaaaagaaagtactaatgtcatcccccatctttttcgacaccctctctgcgaaccaacccccatctgcatcacctaccccatccctaatcttcactact 142  Q
    |||||| ||||||||| |  | ||||||| | ||||||||||||||||||| |||||||||||||| |  || ||||| ||||||||||||||| |||      
T  53941729 ccaaaacaaagtactagttccgtcccccacccttttcgacaccctctctgcaaaccaacccccatccgtgtctcctactccatccctaatcttcgctatc 53941828  T
Q  143 ccccgccaccaagatgaaacactccggccctcgaccaccaa 183  Q
     ||| |||| || | ||| ||||||||||| | ||||||||    
T  53941829 tccctccactaaaaagaatcactccggccccctaccaccaa 53941869  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 34829820 - 34829892
Alignment:
Q  18 ggacatctccaagccacatggcataccaaaagaaagtactaatgtcatcccccatctttttcgacaccctctct 91  Q
    ||||||| ||||||||| || |||||||||||||||||||| |||||||||| | |||||| ||||||||||||    
T  34829820 ggacatcaccaagccacctgtcataccaaaagaaagtactagtgtcatccccta-cttttttgacaccctctct 34829892  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 111 - 169
Target Start/End: Original strand, 34829894 - 34829952
Alignment:
Q  111 catcacctaccccatccctaatcttcactactccccgccaccaagatgaaacactccgg 169  Q
    |||| ||||||||||||||||||||| ||||| | | ||||||||||||||||||||||    
T  34829894 catcgcctaccccatccctaatcttcgctacttcacaccaccaagatgaaacactccgg 34829952  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 172
Target Start/End: Complemental strand, 40513442 - 40513309
Alignment:
Q  39 cataccaaaagaaagtactaatgtcatcccccatctttttcgacaccctctctgcgaaccaacccccatctgcatcacctaccccatccctaatcttcac 138  Q
    ||||||||||| ||||||||  | |||| || |  || |||||||| |||||||| ||||| ||||| ||| || |  |||||||||||||||||||  |    
T  40513442 cataccaaaagtaagtactagagccatctcctactttcttcgacactctctctgcaaaccagcccccctctacaccgtctaccccatccctaatctttgc 40513343  T
Q  139 tactccccgccaccaagatgaaacactccggccc 172  Q
    || | |||||||||| | ||||||||||| ||||    
T  40513342 taattcccgccaccacggtgaaacactcctgccc 40513309  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 170
Target Start/End: Original strand, 42259740 - 42259833
Alignment:
Q  77 ttcgacaccctctctgcgaaccaacccccatctgcatcacctaccccatccctaatcttcactactccccgccaccaagatgaaacactccggc 170  Q
    ||||||||||| ||  | |||||||| ||||| ||  || | |||||||||||||||||||||||  ||| ||||||||| ||| |||||||||    
T  42259740 ttcgacaccctttcaccaaaccaaccaccatcagctccatcgaccccatccctaatcttcactacctccctccaccaagaagaagcactccggc 42259833  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 171
Target Start/End: Original strand, 18896003 - 18896110
Alignment:
Q  64 atcccccatctttttcgacaccctctctgcgaaccaacccccatctgcatcacctaccccatccctaatcttcactactccccgccaccaagatgaaaca 163  Q
    |||||| |||||  ||||||||||||||| |||||| || || ||  |||||| ||| || ||| |||||||| ||||| ||| ||||||||| |||| |    
T  18896003 atcccctatcttcctcgacaccctctctgagaaccacccgccctcatcatcacttacaccgtccttaatcttcgctacttccctccaccaagaagaaata 18896102  T
Q  164 ctccggcc 171  Q
    || |||||    
T  18896103 cttcggcc 18896110  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 172
Target Start/End: Original strand, 476674 - 476768
Alignment:
Q  78 tcgacaccctctctgcgaaccaacccccatctgcatcacctaccccatccctaatcttcactactccccgccaccaagatgaaacactccggccc 172  Q
    |||| |||| ||| || ||||||| ||| || || ||||| | ||| |||||||||||||||||| ||  |||||||||||||  ||||||||||    
T  476674 tcgaaacccgctccgcaaaccaactcccctcagcgtcacccatcccgtccctaatcttcactacttccttccaccaagatgaagtactccggccc 476768  T

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Target: scaffold0043 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 172
Target Start/End: Complemental strand, 34245 - 34194
Alignment:
Q  121 cccatccctaatcttcactactccccgccaccaagatgaaacactccggccc 172  Q
    |||||||||||||||||||||| ||  |||||||||||||  ||||||||||    
T  34245 cccatccctaatcttcactacttccttccaccaagatgaagtactccggccc 34194  T

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