View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9665_low_18 (Length: 204)
Name: NF9665_low_18
Description: NF9665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9665_low_18 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 15 - 190
Target Start/End: Complemental strand, 14914178 - 14914003
Alignment:
| Q |
15 |
ggtgttagcagcattcactttaaagtgatttgttaacaaagaaagtttatttcccattgttcctaggccacgtctagccatcggaactttagttagaagc |
114 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
14914178 |
ggtgttagcggcattcactttaaagtgatttgttaacaaagacagtttatttcccgttgttcctaggccacgtctagccatcggaactttagatagaagc |
14914079 |
T |
|
| Q |
115 |
ttcttctttacatgctcttgttcaataattactggtttaacatttcgaggaacagtgggaggtggtgggggaaaag |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14914078 |
ttcttctttacatgctcttgttcaataattactggtttaacatttcgaggaacagtgggaggtggtgggggaaaag |
14914003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 9e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 16 - 185
Target Start/End: Complemental strand, 38121807 - 38121638
Alignment:
| Q |
16 |
gtgttagcagcattcactttaaagtgatttgttaacaaagaaagtttatttcccattgttcctaggccacgtctagccatcggaactttagttagaagct |
115 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||||||| |||||| |||| | || ||||||||||| |||||||| ||| | ||||| |||||| |
|
|
| T |
38121807 |
gtgttagcaacattcacttcaaagtgatttgttaacaaaggcagtttagctcccttcgtccctaggccacgcctagccattggagccttagtaggaagct |
38121708 |
T |
|
| Q |
116 |
tcttctttacatgctcttgttcaataattactggtttaacatttcgaggaacagtgggaggtggtggggg |
185 |
Q |
| |
|
||||||||| |||||| ||||| || ||| |||||||||||| | |||||| |||||||||||||||| |
|
|
| T |
38121707 |
tcttctttaaatgctcctgttctatctttattggtttaacattgggtggaacaatgggaggtggtggggg |
38121638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University