View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9665_low_4 (Length: 381)
Name: NF9665_low_4
Description: NF9665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9665_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 3 - 370
Target Start/End: Complemental strand, 55689858 - 55689504
Alignment:
| Q |
3 |
aaacgtttgcaaacagcaaaataaactcaatgtgtcgaaatttcaccgaggcagagtactatgatttcaccctttccatggaccccaaggacttccctgt |
102 |
Q |
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| T |
55689858 |
aaacgtttgcaaagagcaaaataaactcaatgtgttgaaatttcaccgaggcagagtactatgatttcaccctttccatggaccctaaggacttccctgt |
55689759 |
T |
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| Q |
103 |
taatcataaaaagtcataaaaagcaggtatcaatcaagtaatacacaatacaaagcaatgaaccatcgttttcaacttctaatccatctcaaacagaaaa |
202 |
Q |
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| T |
55689758 |
taatcataaaaag----------caggtaccaatcaagtaacacacaatacaaagcaatgaaccatcgtt--caacttctaatccatctcaaacagaaaa |
55689671 |
T |
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| Q |
203 |
acatcagcaggtacagccactgctgattagtgattacagactcatttatatcacaagttcat-acccctcactcattcctnnnnnnnggcaaattttcaa |
301 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||| |
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| T |
55689670 |
acatcggcaggtacagccactgctgattagtgattacagactcatttatatcacaagttcataacccctcagtcattcctaaaaaaaggcaaattttcaa |
55689571 |
T |
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| Q |
302 |
caggctatcaatatcttacaaatatgtgacagccactgctgatcacagactcattcatgtcacaggttc |
370 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
55689570 |
caggctatcaatatcttacaaatatgtgacagccactgctgat--cagactcattcatgtcacaagttc |
55689504 |
T |
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