View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9665_low_6 (Length: 321)

Name: NF9665_low_6
Description: NF9665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9665_low_6
NF9665_low_6
[»] chr3 (1 HSPs)
chr3 (9-303)||(37375711-37375997)


Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 9 - 303
Target Start/End: Original strand, 37375711 - 37375997
Alignment:
Q  9 gtagattatactatgattattccaaatatccgatgcacactttcacgtgttaacatgaatgggacaatatatcttgaagtgtttgcccaagaatatatgt 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  37375711 gtagattatactatgattattccaaatatccgatgcacactttcacgtgttaacatgaatgggacaatatctcttgaagtgtttgcccaagaatatatgt 37375810  T
Q  109 gtcccattggttttatggcaacgtgaaatcgtgaagtgttgctgctaacaaaaacttcagcatggaattcaagcacatgtcagatcagatctgtacatta 208  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||        ||||||||||||||||||||| ||| |||||||||||||||||||    
T  37375811 gtcccattggttttaaggcaacgtgaaatcgtgaagtgttgctgcta--------ttcagcatggaattcaagcacgtgttagatcagatctgtacatta 37375902  T
Q  209 caattacaaagaatggataagaagtataattaacttatttgtttatttatttaccaaactgcaattcaatatttttgtatacccttaggaatatt 303  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37375903 caattacaaacaatggataagaagtataattaacttatttgtttatttatttaccaaactgcaattcaatatttttgtatacccttaggaatatt 37375997  T

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