View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9666_high_5 (Length: 293)
Name: NF9666_high_5
Description: NF9666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9666_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 16 - 277
Target Start/End: Complemental strand, 54593270 - 54593009
Alignment:
| Q |
16 |
agtttggtggtgttaacaggaaactaacgcagagctatatatattcttctcatgtttcacctatgtatatcatacacattatgttttggatcatatcaat |
115 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
54593270 |
agttgggtggtgttaacaggaaactaacgcagagctatatatattcttctcatgtttcacctatgtatatcatgcacattatgttttggatcatatcaat |
54593171 |
T |
|
| Q |
116 |
gtaccaattaccaaacctattcaagtcacttttagtgccatttcatggttactaatgtgtgagcttgtaaaatatatttagagaaggtttcgactaaaat |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
54593170 |
gtaccaattaccaaacctattcaagtcacttttagtgccatttcatggttactaatgtgtgagcttgtaaaatatatttagagaaggtttccactaaaat |
54593071 |
T |
|
| Q |
216 |
cctagactagacaaagacactgcttttacaatcatcaccattgctctttgatagcgcaaagc |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
54593070 |
cctagactagacaaagacactgcttttacaatcaccaccattgctctttgatagcgcaaagc |
54593009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 91 - 230
Target Start/End: Original strand, 37946033 - 37946163
Alignment:
| Q |
91 |
acattatgttttggatcatatcaatgtaccaattaccaaacctattcaagtcacttttagtgccatttcatggttactaatgtgtgagcttgtaaaatat |
190 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||||||||||||||| |||| ||||||||||||||| | ||||||||||||||| || |
|
|
| T |
37946033 |
acattatgttttggatcatatcattgtaccag-------acctattcaagtcactttcagtgtcatttcatggttactca--tgtgagcttgtaaaacat |
37946123 |
T |
|
| Q |
191 |
atttagagaaggtttcgactaaaatcctagactagacaaa |
230 |
Q |
| |
|
|| || | |||||| || ||||| |||||||||||||| |
|
|
| T |
37946124 |
atacaggcagggtttctaccaaaatgctagactagacaaa |
37946163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University