View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9666_low_10 (Length: 334)
Name: NF9666_low_10
Description: NF9666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9666_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 18 - 325
Target Start/End: Original strand, 31351946 - 31352255
Alignment:
| Q |
18 |
agttgccacgtgaattatagggagaagcagtgatcactgcaacttaaatcttgaaaaaatgtcctaataagaagttgaagacaatggttcatgagaaagg |
117 |
Q |
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| T |
31351946 |
agttgccacgtgaattatagggagaagcagtgatcactgcaacttaaatcttgaaaaaatgtcctaataagaagttgaagacaatggttcatgagaaagg |
31352045 |
T |
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| Q |
118 |
gtggttagaaggaaagcatgatgtcactcat--tttagagtatttgattctttatgctatgagaacataccagatgctaagagaaataaattggaagaca |
215 |
Q |
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| T |
31352046 |
gtggttagaaggaaagcatgatgtcactcatattttagagtatttgattctttatgctatgagaacataccagatgctaagagaaataaattggaagaca |
31352145 |
T |
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| Q |
216 |
agagtgaaccaattattctacatcatttttcttgaattgttgcattgaagcatttacaataattcatattgcattctcaatgactataatcgaaccctct |
315 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31352146 |
agagtgaaccaattattctacatcttttttcttgaattgttgcattgaagcatttagaataattcatattgcattctcaatgactataatcgaaccctct |
31352245 |
T |
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| Q |
316 |
tcacctttgc |
325 |
Q |
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|||||||||| |
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| T |
31352246 |
tcacctttgc |
31352255 |
T |
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