View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9666_low_22 (Length: 244)
Name: NF9666_low_22
Description: NF9666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9666_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 18934220 - 18933998
Alignment:
| Q |
1 |
gctccacatgcctacacaagtgcaaagcacgccgttgttgggctgatgaggaacacggccatcgagcttggacggtttggtattcgggtgaattgtgtgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18934220 |
gctccacatgcctacacaagtgcaaagcacgccgttgttgggctgatgagaaacacggccatcgagcttggacggtttggtattcgggtgaattgtgtgt |
18934121 |
T |
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| Q |
101 |
caccttatattgttgcaactccgttggttaagaaatactttaagctcgatgatgatgatgatgttctagatgtttattctaacctaaagggtgctaatct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
18934120 |
caccttatattgttgcaactccgttggttaagaaatattttaagctcgatgatgatgatgatgttttagatgtttattctaacctaaagggtgctaatct |
18934021 |
T |
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| Q |
201 |
tgtgccaaaagatgtggctgaag |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
18934020 |
tgtgccaaaagatgtggctgaag |
18933998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 5 - 223
Target Start/End: Complemental strand, 18946401 - 18946186
Alignment:
| Q |
5 |
cacatgcctacacaagtgcaaagcacgccgttgttgggctgatgaggaacacggccatcgagcttggacggtttggtattcgggtgaattgtgtgtcacc |
104 |
Q |
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||||||||||||||||| |||||||||||||||||||||| |||| || ||||||||||||||||||| || |||||||| ||||||||||||||||| |
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| T |
18946401 |
cacatgcctacacaagttcaaagcacgccgttgttgggctaatgaaaaatacggccatcgagcttggaccgtacggtattcgagtgaattgtgtgtcacc |
18946302 |
T |
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| Q |
105 |
ttatattgttgcaactccgttggttaagaaatactttaagctcgatgatgatgatgatgttctagatgtttattctaacctaaagggtgctaatcttgtg |
204 |
Q |
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| T |
18946301 |
ttatgttgtcggaactccgttggctaagaatttctttaagct---tgatgatgatggagttctagatgtttattctaacctaaagggtgctaatcttttg |
18946205 |
T |
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| Q |
205 |
ccaaaagatgtggctgaag |
223 |
Q |
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||||||||||||||||||| |
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| T |
18946204 |
ccaaaagatgtggctgaag |
18946186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 18929546 - 18929327
Alignment:
| Q |
1 |
gctccacatgcctacacaagtgcaaagcacgccgttgttgggctgatgaggaacacggccatcgagcttggacggtttggtattcgggtgaattgtgtgt |
100 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||| | || |||||||||||||||||||||| |
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| T |
18929546 |
gctccacatgcctacacaagttcaaagcacgccgttgttgggctgatgagaaacacggctatcgagcttgggccattcggtattcgggtgaattgtgtgt |
18929447 |
T |
|
| Q |
101 |
caccttatattgttgcaactccgttggttaagaaatactttaagctcgatgatgatgatgatgttctagatgtttattctaacctaaagggtgctaatct |
200 |
Q |
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| |||||| || |||| |||||| |||||| || | ||||||||| |||||||| || | ||||||| ||| |||||||||||||||| ||||||| |
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| T |
18929446 |
cgccttattttcttgcgactccgatggttacaaatttctttaagct---tgatgatggtggagctctagatattttttctaacctaaagggtactaatct |
18929350 |
T |
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| Q |
201 |
tgtgccaaaagatgtggctgaag |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
18929349 |
tgtgccaaaagatgtggctgaag |
18929327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 5 - 223
Target Start/End: Complemental strand, 18938900 - 18938685
Alignment:
| Q |
5 |
cacatgcctacacaagtgcaaagcacgccgttgttgggctgatgaggaacacggccatcgagcttggacggtttggtattcgggtgaattgtgtgtcacc |
104 |
Q |
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||||||||||||||||| ||||||| || ||| | ||||||||||| |||||||| ||||| ||||||| ||| ||||||||||||||||||| ||||| |
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| T |
18938900 |
cacatgcctacacaagttcaaagcatgctgttttggggctgatgagaaacacggcaatcgaacttggaccgttcagtattcgggtgaattgtgtttcacc |
18938801 |
T |
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| Q |
105 |
ttatattgttgcaactccgttggttaagaaatactttaagctcgatgatgatgatgatgttctagatgtttattctaacctaaagggtgctaatcttgtg |
204 |
Q |
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||||||||| || || ||| ||| |||||| | ||| ||||| ||||||||| | |||||| |||||||||||||||||||| ||||||||||| |
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| T |
18938800 |
ttatattgtcgccacaccgatggctaagaacttcttaaagct---tgatgatgaagggcttctagggctttattctaacctaaagggtactaatcttgtg |
18938704 |
T |
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| Q |
205 |
ccaaaagatgtggctgaag |
223 |
Q |
| |
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|| |||||||||||||||| |
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| T |
18938703 |
cctaaagatgtggctgaag |
18938685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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