View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9666_low_25 (Length: 225)
Name: NF9666_low_25
Description: NF9666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9666_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 3484193 - 3483994
Alignment:
| Q |
18 |
aaaaactacaaattgattgaacaacatatgagaaatttgttcagcttgttgtctaacaggaaacctagctagttcattgggcatatgattacctactctc |
117 |
Q |
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| T |
3484193 |
aaaaactacaaattgattgaacaacatatgagaaatttgttcaacttgttgtctaacaggaaacctagctagttcgttggccatatgattacctactctc |
3484094 |
T |
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| Q |
118 |
ctaattaacatataaattgaagtagaatgaaaatatatttctaaatcccnnnnnnncaaagtcaagagtagcatctatcgtatattccctttgcttctcc |
217 |
Q |
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| T |
3484093 |
c----taacatataaattgaagtagaatgaaaatatatttctaaatcccaaaaaaacaaagtcaagagtagcatctatcgtatattccctttgaatctcc |
3483998 |
T |
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