View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9666_low_3 (Length: 453)
Name: NF9666_low_3
Description: NF9666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9666_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 1 - 435
Target Start/End: Complemental strand, 316374 - 315940
Alignment:
| Q |
1 |
aactgctttttatgagcagtaaggtaaaaaacattcttgttttatttttactataacttcttgtaagaaaatgaagatgtgacttccacgaatttgtcca |
100 |
Q |
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| T |
316374 |
aactgctttttatgagcagtaaggtaaaaaacattcttgttttatttttactataacttcttgtaagaaaatgaagatgtgacttccacgaatttgtcca |
316275 |
T |
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| Q |
101 |
tggtttttatggttttaaacctccgattctagggaaaaatgaccctagtaatgcggactatcgagtttgatcaataggtatttttctacttaacaggcta |
200 |
Q |
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| T |
316274 |
tggtttttatggttttaaacctccgattctagggaaaaatgaccctagtaatgcggactatcgagtttgatcaattggtatttttctacttaacaggcta |
316175 |
T |
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| Q |
201 |
aatggaaacaacataaagcaataagaggaggtatatcagcttgctttgcacgggtaagtagtttcatcgtatacacaacatatggtgtaaacatatttca |
300 |
Q |
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| T |
316174 |
aatggaaacaacataaagcaatcagaggaggtatatcagcttgcttcgcacgggtaagtagtttcatcgtatacacaacatatggtgtaaacatatttca |
316075 |
T |
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| Q |
301 |
gttttctccttacttgttgagaaattttttccaaacttgttgatattcaactacaattctatgttgcagtttggtgatgttggttcacttgagcaacatg |
400 |
Q |
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| T |
316074 |
gttttctccttacttgttgagaaattttttccaaacttgttgatattcaactacaattctatgttgcagtttggtgatgttggttcacttgagcaacatg |
315975 |
T |
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| Q |
401 |
gaatgacaagaaatagaatgtggtcattggataga |
435 |
Q |
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| T |
315974 |
gaatgacaagaaatagaatgtggtcattggataga |
315940 |
T |
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