View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9666_low_4 (Length: 443)
Name: NF9666_low_4
Description: NF9666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9666_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 18 - 319
Target Start/End: Complemental strand, 10208079 - 10207780
Alignment:
| Q |
18 |
ggaaagtcggcctatcaactaaaccaaaccatttgtttgttcatcccaaatactttgttatacgtatatttattcatttggattgctcaatctttcttct |
117 |
Q |
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| T |
10208079 |
ggaaagtcggcctatcaactaaaccaaaccatttgtttgttcatcccaaatact--gttatacgtatatttattcatttggatcgctcgatctttcttct |
10207982 |
T |
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| Q |
118 |
aaatttgcatccaatcactggttttcctattggagttgaatctatcttaattgttgtagtgacatttgtttgtgaccatttcgaccgcaattgtgttggc |
217 |
Q |
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| T |
10207981 |
aaatttgcatccaatcactggttttcctattggagttgaatctatcttaattgttgtagtgacatttgtttgtgaccatttcgaccgcaattgtgttggc |
10207882 |
T |
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| Q |
218 |
agcatcattgtcacttctccattttcattttagttgtggaacatctgcaaaccactatgaagtcgaagaaggaaaagagtgtgaatttcttcacctccca |
317 |
Q |
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| T |
10207881 |
agcatcattgtcacttctccatttttattttagttgtggaacatctgcaaaccactatgaagtcgaagaaggaaaagagtgtgaatttcttcacctccca |
10207782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 407
Target Start/End: Complemental strand, 10207779 - 10207747
Alignment:
| Q |
375 |
atcatggttgtcgaagacaacaatataagaaat |
407 |
Q |
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| T |
10207779 |
atcatggttgtcgaagaaaacaatataagaaat |
10207747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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