View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9666_low_9 (Length: 360)
Name: NF9666_low_9
Description: NF9666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9666_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 6 - 344
Target Start/End: Original strand, 27539229 - 27539574
Alignment:
| Q |
6 |
ttcaattcgagtccacacatatctgaagtacatgaat-------aacaaattacaaatgacaaagccatagccccctaaaacttgtgcctattctcaata |
98 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||| ||||||||||||||| |
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| T |
27539229 |
ttcaattcgagtccacacatatctgaagtacatgaataacgaataacaaattacaaatgacaaagccataacccccttaaacttatgcctattctcaata |
27539328 |
T |
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| Q |
99 |
atgctcttaacaattctaaccaagaaagctacacctgcaacaactattaaccgcctactgcaccagacatataatgtaactaaacataccaattaccaca |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27539329 |
atgctcttaacaattctaaccaagaaagctacacctgcaacaactattaaccgcctactgcaccagacatataatgtaactaaacataccaattaccaca |
27539428 |
T |
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| Q |
199 |
aattcagacatgaccaagagcctnnnnnnntacatatggctttccttctaaaaaagtatcagcattacacacctaaagtatcagcacgacatatctatga |
298 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||| |||||||| |
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| T |
27539429 |
aattgagacatgaccaagagcctaaaaaaatacatatggctttccttctaaaaaagtatcagcattacacacgtaaagtatcaacacaacacatctatga |
27539528 |
T |
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| Q |
299 |
caattaatttttaagaatcaattgatgcctacacaaacgttgtcag |
344 |
Q |
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|||||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
27539529 |
caattaatttttaagaatcaattgatacatacacaaacgttgtcag |
27539574 |
T |
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