View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9667_high_11 (Length: 364)
Name: NF9667_high_11
Description: NF9667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9667_high_11 |
 | |
|
| [»] scaffold0085 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 32038811 - 32039164
Alignment:
| Q |
1 |
acataataaatcaatttcaaaaacgaatttccgtcttaatttatagaacacgataaaaatcaatttcataaactctatttccaaactgaaaaacccacca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
32038811 |
acataataaatcaatttcaaaaacgaatttccgtctcaatttatagaacacgaaaaaaatcaatttcataaactctatttctaaactgaaaaacccacca |
32038910 |
T |
|
| Q |
101 |
atcaaaggaaactcatctaatccaaaataccctagattcacgattcactagtttcctctaatttcaaatgatttcatgaatattaaataaattatgtgca |
200 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |
|
|
| T |
32038911 |
atcaaaggaaactcatctaattcaaaataccctagattcacgattcactagtttcctctaatttcaaatgatttcatgaatattagataaattatgtaca |
32039010 |
T |
|
| Q |
201 |
taggttgcaatatgtatgagaaatctattaaggagtggatgtggtagagaataactaattgtacagaagcaaaaatgagtatgttcttcaatttgtgatt |
300 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
32039011 |
taggttgcaacatgtatgagaaatctatcaaggagtggatgtggtagagaataactaattgtccagaagcaaaaatgagtatattcttcaatttgtgatt |
32039110 |
T |
|
| Q |
301 |
ggaagagatacataactaccgtgagtcaatttagaaattatttattagcctttg |
354 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
32039111 |
ggaagagatacataattaccgtgagtcaatttaaaaattatttattagcctttg |
32039164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 45 - 313
Target Start/End: Original strand, 40021808 - 40022074
Alignment:
| Q |
45 |
agaacacgataaaaatcaatttcataaactctatttccaaactgaaaaacccaccaatcaaaggaaactcatctaatccaaaataccctagattcacgat |
144 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
|
|
| T |
40021808 |
agaacacgataaaaagaaattttataaactctatttccaaactgaaaaacccaccaatcaaaggaaacccatctaatccaaaataccctagattcatgat |
40021907 |
T |
|
| Q |
145 |
tcactagtttcctctaatttcaaatgatttcatgaatattaaataaattatgtgcataggttgcaatatgtatgagaaatctattaaggagtggatgtgg |
244 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||| || ||| |
|
|
| T |
40021908 |
tcactagtttcctctaatttcaaatgatttcat-aattttagataaattatgtgcataggttgcaatatgtatgagaaatctatcaaggagtgcatatgg |
40022006 |
T |
|
| Q |
245 |
tagagaataactaattgtacagaagcaaaaatgagtatgttcttcaatttgtgattggaagagatacat |
313 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||||||| |||||||||||||| ||||||| |||| |
|
|
| T |
40022007 |
tagagaataactaattgttcagaagaaaaaatgagtatg-gcttcaatttgtgatcagaagagagacat |
40022074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 31602371 - 31602707
Alignment:
| Q |
1 |
acataataaatcaatttcaaaaacgaatttccgtcttaatttatagaacacgataaaaatcaatttcataaactctatttccaaactgaaaaacccacca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
31602371 |
acataataaatcaatttcaaaaacgaatttccatctcaatttatagaacacgataaaaatcaatttcataaactctatttccaaactgaaaaatccacca |
31602470 |
T |
|
| Q |
101 |
atcaaaggaaactcatctaatccaaaataccctagattcacgattcactagtttcctctaatttcaaatgatttcatgaatattaaataaattatgtgca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
31602471 |
atcaaaggaaactcatctaatccaaaatacccaagattcacgattcactagtttcctctaatttcaaatgatttcatgaatattagataaattatgtgca |
31602570 |
T |
|
| Q |
201 |
taggttgcaatatgtatgagaaatctattaaggagtggatgtggtagagaataactaattgtacagaagcaaaaatgagtatgttcttcaatttgtgatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
31602571 |
taggttgcaatatgtatgagaaatctatcaaagagtggatgtggtagagaataactaattgtccagaagcaaaaatgagtatgttcttcgatttgtgatc |
31602670 |
T |
|
| Q |
301 |
ggaagagatacataactaccgtgagtcaatttagaaa |
337 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||| |
|
|
| T |
31602671 |
agaagagatacataattaccatgagtcaatttagaaa |
31602707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 13349748 - 13350083
Alignment:
| Q |
1 |
acataataaatcaatttcaaaaacgaatttccgtcttaatttatagaacacgataaaaatcaatttcataaactctatttccaaactgaaaaacccacca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
13349748 |
acataataaatcaatttcaaaaacgaatttccgtctcaatttatagaacacgataaaaatcaatttcataaactctatttccaaaatgaaaaacccacca |
13349847 |
T |
|
| Q |
101 |
atcaaaggaaactcatctaatccaaaataccctagattcacgattcactagtttcctctaatttcaaatgatttcatgaatattaaataaattatgtgca |
200 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
13349848 |
atcaaaggaaacttctctaatccaaaataccctagattcaggattcactagtttcctctaatttcaaatgatttcatgaatattagataaattatgtgca |
13349947 |
T |
|
| Q |
201 |
taggttgcaatatgtatgagaaatctattaagg---agtggatgtggtagagaataactaattgtacagaagcaaaaatgagtatgttcttcaatttgtg |
297 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
13349948 |
taggttgcaatatgtatgagaaatctatcaaggagaagtggatgtggtagagaataactaattgtccagaagcaaaaatgagtatattcttcaatttgtg |
13350047 |
T |
|
| Q |
298 |
attggaagagataca--taactaccgtgagtcaatt |
331 |
Q |
| |
|
||| ||||||||||| ||| ||||||||||||||| |
|
|
| T |
13350048 |
attagaagagatacatgtaattaccgtgagtcaatt |
13350083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 143 - 250
Target Start/End: Complemental strand, 5862212 - 5862105
Alignment:
| Q |
143 |
attcactagtttcctctaatttcaaatgatttcatgaatattaaataaattatgtgcataggttgcaatatgtatgagaaatctattaaggagtggatgt |
242 |
Q |
| |
|
||||| ||| ||| ||||||| ||| ||||||||||||| || ||||||||| | |||||||||||| | |||||||||| || ||||||||||||| |
|
|
| T |
5862212 |
attcattagattcttctaattccaatcgatttcatgaataatagataaattatctatataggttgcaatctatatgagaaataaatcaaggagtggatgt |
5862113 |
T |
|
| Q |
243 |
ggtagaga |
250 |
Q |
| |
|
||| |||| |
|
|
| T |
5862112 |
ggtggaga |
5862105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 250
Target Start/End: Original strand, 15774702 - 15774809
Alignment:
| Q |
143 |
attcactagtttcctctaatttcaaatgatttcatgaatattaaataaattatgtgcataggttgcaatatgtatgagaaatctattaaggagtggatgt |
242 |
Q |
| |
|
||||| ||| ||||||||||| ||| |||||||||||| || ||||||||| || |||||||||||| | ||| |||||| || |||||||||| || |
|
|
| T |
15774702 |
attcattagcttcctctaattccaatccatttcatgaataatagataaattatctgaataggttgcaatctatataagaaataaatcaaggagtggaggt |
15774801 |
T |
|
| Q |
243 |
ggtagaga |
250 |
Q |
| |
|
||| |||| |
|
|
| T |
15774802 |
ggtggaga |
15774809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0085 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0085
Description:
Target: scaffold0085; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 250
Target Start/End: Complemental strand, 15410 - 15301
Alignment:
| Q |
143 |
attcactagtttcctctaatttcaaatgatttcatgaatattaaataaattatgtgcataggttgcaa--tatgtatgagaaatctattaaggagtggat |
240 |
Q |
| |
|
||||| ||| ||||||||||| ||| |||||||||||| || ||||||||| | ||||||||||| ||| |||||| ||| || ||||||||||| |
|
|
| T |
15410 |
attcattagcttcctctaattccaatcgatttcatgaattatagataaattatatttataggttgcaatctatatatgagcaataaatcaaggagtggat |
15311 |
T |
|
| Q |
241 |
gtggtagaga |
250 |
Q |
| |
|
||||| |||| |
|
|
| T |
15310 |
gtggtggaga |
15301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University