View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9667_high_12 (Length: 363)
Name: NF9667_high_12
Description: NF9667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9667_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 165; Significance: 3e-88; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 68 - 289
Target Start/End: Complemental strand, 3747605 - 3747388
Alignment:
| Q |
68 |
agaaatagagaagaggggaaaattgaaaataatttttggcggtaaaacgttctatga---aagaacctctaacaacaatgttcattcaacactacaaatc |
164 |
Q |
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| T |
3747605 |
agaaatagagaagaggggaaaattgaaaatattttttggtggtaaaacgatctatgatgaaagaacctctaacaacaatgttcattcaacaatacaaatc |
3747506 |
T |
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| Q |
165 |
aatctaaatgttgttagggaaaatggatagaaccctaccgatagatcaaagactcccggcgtaccgaacaataatattctctatgttgcaagccttttca |
264 |
Q |
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| T |
3747505 |
aatctaaatgttgttagggaaaatggatagaaccctaccg-------aaagactaccggcgtaccgaacaataatattctctatgttgcaagccttttca |
3747413 |
T |
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| Q |
265 |
gaaaaaactatccaacagtgattga |
289 |
Q |
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| T |
3747412 |
gaaaaaactatccaacagtgattga |
3747388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 51 - 203
Target Start/End: Original strand, 3134465 - 3134620
Alignment:
| Q |
51 |
ttgcaaacactattccaagaaatagagaagaggggaaaattgaaaataatttttggcggtaaaacgttctatga---aagaacctctaacaacaatgttc |
147 |
Q |
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| T |
3134465 |
ttgcaaacactataccaaaaaatggagaagagtggaaaattgaaaataatttttagcggtaaaacgatctatgatgaaagaacctctaacaacaatgttc |
3134564 |
T |
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| Q |
148 |
attcaacactacaaatcaatctaaatgttgttagggaaaatggatagaaccctacc |
203 |
Q |
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| T |
3134565 |
attcaacactacaaatcaatcctaatgttattagggaaaatggatacaaccctacc |
3134620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 3747642 - 3747603
Alignment:
| Q |
7 |
gcagcacagattcattcatttgcgcactttcattcagaga |
46 |
Q |
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| T |
3747642 |
gcagctcagattcattcatttgcgcactttcattcagaga |
3747603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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