View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9667_high_13 (Length: 355)
Name: NF9667_high_13
Description: NF9667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9667_high_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 18 - 339
Target Start/End: Original strand, 46751482 - 46751811
Alignment:
| Q |
18 |
agacatgttgaaaaataaaagacaaatatatctttgaccatctcgtaaaacataattttgtctaatagatcctattctcgtaaaacaatttaatttcgtg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46751482 |
agacatgttgaaaaataaaagacaaatatatctttgaccatctcgtaaaacataattttgtctaatagatcctattctcgtaaaacaatttaatttcgtg |
46751581 |
T |
|
| Q |
118 |
taggagacttaaagcaaaagcaagaagatattcttggagttattttttaatcaaaataaataaatttaagaacaaaatatcagt------------tacc |
205 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
46751582 |
taggagacataaagcaaaagcaagaagatattcttggagttattttttaatcaaaataaataaatttaagaacaaaatatcagttactttggaatatacc |
46751681 |
T |
|
| Q |
206 |
ttataatcatcataacctcattgaatcgaaaaacatatgttccaattgatgttgttggtctactaggatgcctgtctattctataatctataggtggaag |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
46751682 |
ttataatcatcataacctcattgaatcgaaaaacatacgttccaattgatgttgttggtctactagga----tgtctattctataatctaaaggtggaag |
46751777 |
T |
|
| Q |
306 |
aaaatgatacgaagacttagcacattctaaaatg |
339 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
46751778 |
aaaatgatacgaagacttagcacattctaaaatg |
46751811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 192
Target Start/End: Complemental strand, 21215208 - 21215176
Alignment:
| Q |
160 |
ttttttaatcaaaataaataaatttaagaacaa |
192 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |
|
|
| T |
21215208 |
ttttttaataaaaataaataaatttaagaacaa |
21215176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University