View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9667_high_17 (Length: 304)
Name: NF9667_high_17
Description: NF9667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9667_high_17 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 14174846 - 14175149
Alignment:
| Q |
1 |
gcaactctgctccagatggagcactcactttgtcccaggtaaaagatagtatgttcaatgaagaaacaagaagaaaagacatgggatcaagtagctctca |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14174846 |
gcaactctgctccagatggagcgctcactttgtcccaggtaaaagatagtatgttcaatgaagaaacaagaagaaaagacatgggatcaagtagctctca |
14174945 |
T |
|
| Q |
101 |
ggcccttgtcacggagaacagaggcagaagcaagagcggggggagatccaataaatccaaagacagatcacaatctcaacctcgaagaaagttcaagtgc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14174946 |
ggcccttgtcacggagaacagaggcagaagcaagagcggggggagatccaataaatccaaagacagatcacaatctcaacctcgaagaaagttcaagtgt |
14175045 |
T |
|
| Q |
201 |
tttcactgcggcgaagaaggtcacatcaaaagaaattgcaaatcttggaagaacaaagaaaagaaggaccggaggaatcaaagaccagacgaagatgaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14175046 |
tttcactgcggcgaagaaggtcacatcaaaagaaattgcaaatcttggaagaacaaagaaaagaaggaccggaggaatcaaagaccagacgaagatgaaa |
14175145 |
T |
|
| Q |
301 |
atac |
304 |
Q |
| |
|
|||| |
|
|
| T |
14175146 |
atac |
14175149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 28611031 - 28610729
Alignment:
| Q |
1 |
gcaactctgctccagatggagcactcactttgtcccaggtaaaagatagtatgttcaatgaagaaacaagaagaaaagacatgggatcaagtagctctca |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28611031 |
gcaactctgctccagatggagcgctcactttgtcccaggtaaaagatagtatgttcaatgaagaaacaagaagaaaagacatgggatcaagtagctctca |
28610932 |
T |
|
| Q |
101 |
ggcccttgtcacggagaacagaggcagaagcaagagcggggggagatccaataaatccaaagacagatcacaatctcaacctcgaagaaagttcaagtgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28610931 |
ggcccttgtcacggagaacagaggcagaagcaagagcggggggagatccaataaatcc-aagacagatcacaatctcaacctcgaagaaagttcaagtgt |
28610833 |
T |
|
| Q |
201 |
tttcactgcggcgaagaaggtcacatcaaaagaaattgcaaatcttggaagaacaaagaaaagaaggaccggaggaatcaaagaccagacgaagatgaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28610832 |
tttcactgcggcgaagaaggtcacatcaaaagaaattgcaaatcttggaagaacaaagaaaagaaggaccggaggaatcaaagaccagacgaagatgaaa |
28610733 |
T |
|
| Q |
301 |
atac |
304 |
Q |
| |
|
|||| |
|
|
| T |
28610732 |
atac |
28610729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 12931576 - 12931879
Alignment:
| Q |
1 |
gcaactctgctccagatggagcactcactttgtcccaggtaaaagatagtatgttcaatgaagaaacaagaagaaaagacatgggatcaagtagctctca |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
12931576 |
gcaactctgctccagatggagcgctcactttgtcccaggtaaaagatagtatgttcaatgaagaaacaagaagaaaatacatgggatcaagtagctctca |
12931675 |
T |
|
| Q |
101 |
ggcccttgtcacggagaacagaggcagaagcaagagcggggggagatccaataaatccaaagacagatcacaatctcaacctcgaagaaagttcaagtgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12931676 |
tgcccttgtcacggagaacagaggcagaagcaagagcggggggagatccaataaatccaaagacagatcacaatctcaacctcgaagaaagttcaagtgt |
12931775 |
T |
|
| Q |
201 |
tttcactgcggcgaagaaggtcacatcaaaagaaattgcaaatcttggaagaacaaagaaaagaaggaccggaggaatcaaagaccagacgaagatgaaa |
300 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
12931776 |
tttcactgcaacgaagaaggtcacatcaaaagaaattgcaaatcttggaagaacaaagaaaagaaagaccggaggaatcaaagaccagacgaagatgaaa |
12931875 |
T |
|
| Q |
301 |
atac |
304 |
Q |
| |
|
|||| |
|
|
| T |
12931876 |
atac |
12931879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 51 - 304
Target Start/End: Complemental strand, 38996587 - 38996334
Alignment:
| Q |
51 |
atgttcaatgaagaaacaagaagaaaagacatgggatcaagtagctctcaggcccttgtcacggagaacagaggcagaagcaagagcggggggagatcca |
150 |
Q |
| |
|
||||| ||||||||| |||||||| ||||||| ||||||||| |||| | |||||| | | ||| || ||||| | ||| |||||| | | | |||||| |
|
|
| T |
38996587 |
atgtttaatgaagaagcaagaagagaagacataggatcaagtgtctctaaagcccttctaatggaaaatagaggtataagtaagagcagagagtgatcca |
38996488 |
T |
|
| Q |
151 |
ataaatccaaagacagatcacaatctcaacctcgaagaaagttcaagtgctttcactgcggcgaagaaggtcacatcaaaagaaattgcaaatcttggaa |
250 |
Q |
| |
|
|||||||||| || |||||| ||||||| | ||||| ||||||||| | ||||||||||| ||||| ||||||| |||||||||| ||||||||||| |
|
|
| T |
38996487 |
ataaatccaatgatttatcacagtctcaactttaaagaatgttcaagtgttatcactgcggcggagaagatcacatccaaagaaattgtaaatcttggaa |
38996388 |
T |
|
| Q |
251 |
gaacaaagaaaagaaggaccggaggaatcaaagaccagacgaagatgaaaatac |
304 |
Q |
| |
|
||| ||| |||| |||||| ||||| |||| ||| | |||||||||||||| |
|
|
| T |
38996387 |
gaaaaaataaaataaggacaataggaaccaaatacctaaggaagatgaaaatac |
38996334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 51 - 196
Target Start/End: Complemental strand, 24875688 - 24875544
Alignment:
| Q |
51 |
atgttcaatgaagaaacaagaagaaaagacatgggatcaagtagctctcaggcccttgtcacggagaacagaggcagaagcaagagcggggggagatcca |
150 |
Q |
| |
|
|||||| ||||||||| ||||| |||| |||| ||||||||||||||||| || ||||||||| |||||||||||||| |||||| | || |||||| |
|
|
| T |
24875688 |
atgttcgatgaagaaataagaataaaa-acataggatcaagtagctctcaaaccaatgtcacggaaaacagaggcagaagtaagagctgatggtgatcca |
24875590 |
T |
|
| Q |
151 |
ataaatccaaagacagatcacaatctcaacctcgaagaaagttcaa |
196 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||| ||||||||| |
|
|
| T |
24875589 |
ataaatccaaagacagattacagtctcaacctcgaaaaaagttcaa |
24875544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 203 - 304
Target Start/End: Complemental strand, 24874710 - 24874609
Alignment:
| Q |
203 |
tcactgcggcgaagaaggtcacatcaaaagaaattgcaaatcttggaagaacaaagaaaagaaggaccggaggaatcaaagaccagacgaagatgaaaat |
302 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||||| ||| ||||||| ||||||||||||||| ||||||||||| ||| |||||||||||||| |
|
|
| T |
24874710 |
tcactgcggcaaagaaggtcacataaaaagaaattgaaaacaatggaagagcaaagaaaagaaggataagaggaatcaaatgccatacgaagatgaaaat |
24874611 |
T |
|
| Q |
303 |
ac |
304 |
Q |
| |
|
|| |
|
|
| T |
24874610 |
ac |
24874609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University