View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9667_high_25 (Length: 267)
Name: NF9667_high_25
Description: NF9667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9667_high_25 |
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Alignment Details
Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 42196733 - 42196783
Alignment:
| Q |
19 |
acacatatatgtgtatatatagtataaggatatttttgtcatttcaaaaat |
69 |
Q |
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| T |
42196733 |
acacatatatgtgtatatatagtataaagatatttttgtcatttcaaaaat |
42196783 |
T |
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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 221 - 256
Target Start/End: Complemental strand, 19433861 - 19433826
Alignment:
| Q |
221 |
cttaatgatcaactttcactggcattcttctccttt |
256 |
Q |
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| T |
19433861 |
cttaatgatcaactttcactggcattcttctccttt |
19433826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 40686925 - 40686981
Alignment:
| Q |
18 |
gacacatatatgtgtatatatagtataaggatatttttgtcatttcaaaaattatacac |
76 |
Q |
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| T |
40686925 |
gacacatatatgtgtata--tagtatagggatatttttgtcattgcaaaaattagacac |
40686981 |
T |
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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 69
Target Start/End: Complemental strand, 10600414 - 10600380
Alignment:
| Q |
35 |
atatagtataaggatatttttgtcatttcaaaaat |
69 |
Q |
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|||||||||||||||||||||||| |||||||||| |
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| T |
10600414 |
atatagtataaggatatttttgtcttttcaaaaat |
10600380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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