View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9667_high_29 (Length: 245)
Name: NF9667_high_29
Description: NF9667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9667_high_29 |
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Alignment Details
Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 83 - 177
Target Start/End: Complemental strand, 13007870 - 13007776
Alignment:
| Q |
83 |
cgtcaccattatcgttgtctccgcagcagtattaaacgttgtctctccctgttgtttcaaattcattgtctccattgtccagaggtaacaggtaa |
177 |
Q |
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| T |
13007870 |
cgtcaccattatcgttgtctccgcagcagtattaaacgttgtctctccctgttgtttcaaattcattgtctccattgtctcaaggtaacaggtaa |
13007776 |
T |
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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 28 - 132
Target Start/End: Original strand, 25506448 - 25506552
Alignment:
| Q |
28 |
acgtcgtcgccgtgctccattgattaccaccgacgtgctccttgattgccatcgccgtcaccattatcgttgtctccgcagcagtattaaacgttgtctc |
127 |
Q |
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| T |
25506448 |
acgtcgccgccgtgctccattgattaccaccgctgtgcttcttgattgccatcgttgtcaccgttgtcgtcgtctccgcaccagtattcgacgttgtctc |
25506547 |
T |
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| Q |
128 |
tccct |
132 |
Q |
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| T |
25506548 |
accct |
25506552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 28 - 104
Target Start/End: Original strand, 16749107 - 16749183
Alignment:
| Q |
28 |
acgtcgtcgccgtgctccattgattaccaccgacgtgctccttgattgccatcgccgtcaccattatcgttgtctcc |
104 |
Q |
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| T |
16749107 |
acgtcgtcgccgtagtccatttattaccaccgccgtgcttcttgattgccatcgtcgtcaccgttgtcgttgtctcc |
16749183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 28 - 115
Target Start/End: Original strand, 25871404 - 25871491
Alignment:
| Q |
28 |
acgtcgtcgccgtgctccattgattaccaccgacgtgctccttgattgccatcgccgtcaccattatcgttgtctccgcagcagtatt |
115 |
Q |
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| T |
25871404 |
acgtcgtcgccgtagtccatttattaccactgccatgcttcttgattgccatccccgtcaccgttgtcgttgtctccacaccagtatt |
25871491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 132
Target Start/End: Complemental strand, 31121070 - 31120989
Alignment:
| Q |
51 |
ttaccaccgacgtgctccttgattgccatcgccgtcaccattatcgttgtctccgcagcagtattaaacgttgtctctccct |
132 |
Q |
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| T |
31121070 |
ttaccaccgttgtgcttcttgattgccatcgttgtcaccgttgtcgtcgtctccgcaccagtattcgacgttgtctcaccct |
31120989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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