View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9667_high_3 (Length: 484)
Name: NF9667_high_3
Description: NF9667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9667_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 29 - 462
Target Start/End: Complemental strand, 5704586 - 5704157
Alignment:
| Q |
29 |
atgttattaccctatatacctatatattacatgaagttaatgtgaattatttatgttgttcttgattatacttaattttttaatgcattatatgcacacg |
128 |
Q |
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| T |
5704586 |
atgttattaccctatatacctatatattacatgaagttaatgtgaattatttatgttgttcttgattatactaaattttttaatgcattatatgcacacg |
5704487 |
T |
|
| Q |
129 |
tgagttaattatcactctactgcatggttaattaaaagaaatggaaatgaaactaagtagaggttagtaagtagatgaacctggctttgtggtgaaggtg |
228 |
Q |
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| T |
5704486 |
tgagttaattatcactctactgcatggttaattaaaagaaatggaaatgaaactaagtagaggttagtat----atgaacctggctttgtggtgaaggtg |
5704391 |
T |
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| Q |
229 |
gatctttcttgttatcatcagaggaagaaagactaattctgggagcagtttcgggtgtaatgaaactcttgagatcaaaagaaagagaaggggtgttagt |
328 |
Q |
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| T |
5704390 |
gatctttcttgttatcatcagaggaagaaagactaattctgggagcagtttcgggtctaatgaaactcttgagatcaaaagaaagagaaggggtgttagt |
5704291 |
T |
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| Q |
329 |
agtagaattatcggtgttattagaagaaattttaggtgcaagaggacgtaaacgcttgcaaccaagtgtgagggaaggttcatgctcccaaaatccacgt |
428 |
Q |
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| T |
5704290 |
agtagaattatcggtgttattagaagaaattttaggtgcaagaggacgtaaacgcttgcaaccaagtgtgagggaaggttcatgctcccaaaatccacgt |
5704191 |
T |
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| Q |
429 |
gtgaattgatgcaccttcataatgtttatgttta |
462 |
Q |
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| T |
5704190 |
gtgaattgatgcaccttcataatgtttatgttta |
5704157 |
T |
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