View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9667_high_33 (Length: 240)
Name: NF9667_high_33
Description: NF9667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9667_high_33 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 157; Significance: 1e-83; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 41738688 - 41738484
Alignment:
| Q |
18 |
ttaaatatttgattgcacaagttcaaagtaattcttattctcatgtacattgattgacattttgtttgttttaattatcaagttttctttctagtatcaa |
117 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
41738688 |
ttaaatatttgattacacaagttcaaa-taattcttattctcatgtacattgattgacattttgcttgttttaattatcaagttttctttctagtatcaa |
41738590 |
T |
|
| Q |
118 |
ttgtcgttacaaggttttttcaacaaatt-nnnnnnntgtaatggtattaagaaaatgacttaatgatgtactcttaacattttattaaattatttgtgc |
216 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
41738589 |
ttgtcgttacaaggttttttcaacaaattaaaaaaaatgtaatggtattaagaaaatgacttaatgatgcactcttaacattttattaaattatttgtgc |
41738490 |
T |
|
| Q |
217 |
taatcg |
222 |
Q |
| |
|
|||||| |
|
|
| T |
41738489 |
taatcg |
41738484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 29510650 - 29510605
Alignment:
| Q |
5 |
attttttacacttttaaatatttgattgcacaagttcaaagtaatt |
50 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||||| ||| |||| |
|
|
| T |
29510650 |
attttctacacttttaaatatttgattacacaagttccaagaaatt |
29510605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 31
Target Start/End: Original strand, 11160287 - 11160315
Alignment:
| Q |
3 |
atattttttacacttttaaatatttgatt |
31 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
11160287 |
atattttttacacttttaaatatttgatt |
11160315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 44437995 - 44438044
Alignment:
| Q |
5 |
attttttacacttttaaatatttgattgcacaagttcaaagtaattctta |
54 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||||| ||| |||||||| |
|
|
| T |
44437995 |
attttctacacttttaaatatttgattacacaagttccaagaaattctta |
44438044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University