View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9667_low_1 (Length: 721)

Name: NF9667_low_1
Description: NF9667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9667_low_1
NF9667_low_1
[»] chr8 (6 HSPs)
chr8 (19-428)||(15865326-15865734)
chr8 (19-428)||(15858257-15858666)
chr8 (22-428)||(15844122-15844528)
chr8 (19-339)||(15851446-15851766)
chr8 (455-707)||(15857776-15858006)
chr8 (526-615)||(15843755-15843846)
[»] chr2 (8 HSPs)
chr2 (25-226)||(30484695-30484896)
chr2 (26-179)||(8378960-8379113)
chr2 (34-179)||(30404516-30404661)
chr2 (31-159)||(30384998-30385126)
chr2 (31-185)||(30476523-30476677)
chr2 (31-179)||(30395750-30395898)
chr2 (31-185)||(23783310-23783464)
chr2 (128-185)||(30431413-30431470)
[»] chr4 (1 HSPs)
chr4 (74-173)||(11019478-11019577)
[»] chr5 (1 HSPs)
chr5 (32-225)||(41626763-41626956)


Alignment Details
Target: chr8 (Bit Score: 330; Significance: 0; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 19 - 428
Target Start/End: Complemental strand, 15865734 - 15865326
Alignment:
Q  19 caagatcatgatctatggggtgatgatgcaaaggagttcaatcctgaaaggtttgctgaaggaattgcgaaggcaacaaaaggacaagtttcttatttcc 118  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||    
T  15865734 caagatcatgatctatggggtgatgatgcaaaggagttcaaacctgaaaggtttgctgaaggaattgcaaaggctacaaaaggaaaagtttcttatttcc 15865635  T
Q  119 cttttggatggggtcctagaatttgtcttggacaaaactttgccttattagaagcaaagatagcaatttcattgttgctgcagaatttctcattcaaact 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  15865634 cttttggatggggtcctagaatttgtcttggacaaaactttgccttactagaagcaaagatagcaatttcattgctgctgcagaatttctcattcgaact 15865535  T
Q  219 ttctccaaattatgtgcatgttcctaccactgtgcttactttgacgccaaaatatggggcaagcatcattttgcataaactgtaagagcacatccaacgg 318  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||    
T  15865534 ttctccaaattatgtgcatgttcccaccactgtgcttactttgacgccaaaaaatggtgcaagcatcattttgcataaactgtaagagcacatccaatgg 15865435  T
Q  319 agttatttagtcggttaacttttttgggtgatttatctgtaaacctgagtttctttaaattaagacactattgatttgtataagaaaccacaggtatgag 418  Q
    ||||||| ||| | || ||| |||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  15865434 agttattcagtagctttactcttttaggtgatttatctgtaaacatgagtttctttaaattaagaca-tattgatttgtataagaaaccacaggtatgag 15865336  T
Q  419 tttatgaatt 428  Q
    ||||||||||    
T  15865335 tttatgaatt 15865326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 19 - 428
Target Start/End: Complemental strand, 15858666 - 15858257
Alignment:
Q  19 caagatcatgatctatggggtgatgatgcaaaggagttcaatcctgaaaggtttgctgaaggaattgcgaaggcaacaaaaggacaagtttcttatttcc 118  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15858666 caagatcatgatctatggggtgatgatgcaaaggagttcaaacctgaaaggtttgctgaaggaattgcgaaggcaacaaaaggacaagtttcttatttcc 15858567  T
Q  119 cttttggatggggtcctagaatttgtcttggacaaaactttgccttattagaagcaaagatagcaatttcattgttgctgcagaatttctcattcaaact 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||    
T  15858566 cttttggatggggtcctagaatttgtcttggacaaaactttgccttattagaagcaaagatagcagtatcattgttgctgcagaatttctcattcgaact 15858467  T
Q  219 ttctccaaattatgtgcatgttcctaccactgtgcttactttgacgccaaaatatggggcaagcatcattttgcataaactgtaagagcacatccaacgg 318  Q
    |||||||||||||||||||||||||||||| ||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||    
T  15858466 ttctccaaattatgtgcatgttcctaccacggtgcttactttgcagccaaaaaatggggcaagcatcattttgcataaactgtaagagcacatccaatgg 15858367  T
Q  319 agttatttagtcggttaacttttttgggtgatttatctgtaaacctgagtttctttaaattaagacactattgatttgtataagaaaccacaggtatgag 418  Q
    ||||| ||||| ||||||||||||| ||||||   | || ||||  ||||||||||||||||||||||||||| ||| | ||||||||||||||||||||    
T  15858366 agttacttagtaggttaacttttttaggtgatgattttggaaacacgagtttctttaaattaagacactattgctttatgtaagaaaccacaggtatgag 15858267  T
Q  419 tttatgaatt 428  Q
    ||| ||||||    
T  15858266 tttttgaatt 15858257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 22 - 428
Target Start/End: Complemental strand, 15844528 - 15844122
Alignment:
Q  22 gatcatgatctatggggtgatgatgcaaaggagttcaatcctgaaaggtttgctgaaggaattgcgaaggcaacaaaaggacaagtttcttatttccctt 121  Q
    ||||| ||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  15844528 gatcaagatctatggggggatgatgcaaaggagttcaaacccgaaaggtttgctgaaggaattgcgaaggcaacaaaaggacaagtttcttatttcccct 15844429  T
Q  122 ttggatggggtcctagaatttgtcttggacaaaactttgccttattagaagcaaagatagcaatttcattgttgctgcagaatttctcattcaaactttc 221  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||    
T  15844428 ttggatggggtcctagaatttgtcttggacaaaactttaccttattagaagcaaagatagcaatatcattgttgctgcagaatttctcatttgaactttc 15844329  T
Q  222 tccaaattatgtgcatgttcctaccactgtgcttactttgacgccaaaatatggggcaagcatcattttgcataaactgtaagagcacatccaacggagt 321  Q
    ||| ||||||| |||| |||||||||  ||||||||||||| ||||||  ||||||||| |||||||||||||||||||||||||||  ||||  |||||    
T  15844328 tcctaattatgcgcatcttcctaccatggtgcttactttgatgccaaagaatggggcaatcatcattttgcataaactgtaagagcatgtccattggagt 15844229  T
Q  322 tatttagtcggttaacttttttgggtgatttatctgtaaacctgagtttctttaaattaagacactattgatttgtataagaaaccacaggtatgagttt 421  Q
     | ||| |   |||||| |||| ||||||||||||| |||| ||| ||| |||||| || |||||||||| ||| | ||| |||||||||| ||||||||    
T  15844228 cacttaatatcttaactcttttaggtgatttatctggaaacatgaatttatttaaaataggacactattgctttatgtaataaaccacagggatgagttt 15844129  T
Q  422 atgaatt 428  Q
    |||||||    
T  15844128 atgaatt 15844122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 19 - 339
Target Start/End: Complemental strand, 15851766 - 15851446
Alignment:
Q  19 caagatcatgatctatggggtgatgatgcaaaggagttcaatcctgaaaggtttgctgaaggaattgcgaaggcaacaaaaggacaagtttcttatttcc 118  Q
    |||||||| |||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||| ||||| |||||||| |||||||| ||| |||    
T  15851766 caagatcaagatctatggggtgatgatgcaaagaagttcaatcctgaacggttttctgaaggaattgcaaaggccacaaaaggccaagtttcgtatatcc 15851667  T
Q  119 cttttggatggggtcctagaatttgtcttggacaaaactttgccttattagaagcaaagatagcaatttcattgttgctgcagaatttctcattcaaact 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||    
T  15851666 cttttggatggggtcctagaatttgtcttggacaaaactttgccttattagaagcaaagatagcaatatcactgttgctgcagaatttctcattcgaact 15851567  T
Q  219 ttctccaaattatgtgcatgttcctaccactgtgcttactttgacgccaaaatatggggcaagcatcattttgcataaactgtaagagcacatccaacgg 318  Q
    |||||| ||||||||||||||||||| ||| ||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||| ||| || ||    
T  15851566 ttctcctaattatgtgcatgttcctatcacggtgcttactttgcagccaaaaaatggggcaagcatcattttgcataaactgtaagagcatatctaatgg 15851467  T
Q  319 agttatttagtcggttaactt 339  Q
    ||||| ||||| | |||||||    
T  15851466 agttacttagtagcttaactt 15851446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 455 - 707
Target Start/End: Complemental strand, 15858006 - 15857776
Alignment:
Q  455 cctggacgagtatgtcactttttgatattgctgctggctggttttgtttgttgcacctttgggctttggcgtcgttggattatagaaaaaggatccgagc 554  Q
    |||||||||| ||||||| ||||||||| |||||| |||||||||||||||||||  |||||       ||||||||||||||||||||||             
T  15858006 cctggacgaggatgtcacattttgatatagctgcttgctggttttgtttgttgcaattttgg-------cgtcgttggattatagaaaaag--------- 15857923  T
Q  555 atactatctgatatattttctactcctgatgtccataattttgccctgagtgttgctgattccattttcggctagtgctggtgttaccgtctatattgct 654  Q
        | | |||||||||||||| ||||||| |||||||||||||||||  ||||||||||| | ||||| ||||||| |||||||| |||||||||||||    
T  15857922 ----tgtttgatatattttctattcctgatatccataattttgccctg--tgttgctgatttcgttttctgctagtgttggtgttatcgtctatattgct 15857829  T
Q  655 gctttattcaaaacctgtctccagtgttactctcgtgttattgatgttgttgc 707  Q
    | ||||||||||||||||||  |||||| | || |||||||||||||||||||    
T  15857828 gttttattcaaaacctgtctatagtgttgcactggtgttattgatgttgttgc 15857776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 526 - 615
Target Start/End: Complemental strand, 15843846 - 15843755
Alignment:
Q  526 tcgttggattatagaaaaaggatccgagcatactatctgatatattttctactcc----tgatgtccataattttgccctgagtgttgctgatt 615  Q
    ||||||||||||||||||||  |||||||||| ||||||| | ||||||||||||    |||||||||| ||||||||| ||||||||||||||    
T  15843846 tcgttggattatagaaaaagagtccgagcataatatctgacaaattttctactcctgcttgatgtccat-attttgccc-gagtgttgctgatt 15843755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 5e-24; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 25 - 226
Target Start/End: Original strand, 30484695 - 30484896
Alignment:
Q  25 catgatctatggggtgatgatgcaaaggagttcaatcctgaaaggtttgctgaaggaattgcgaaggcaacaaaaggacaagtttcttatttcccttttg 124  Q
    ||||| ||||||||||| ||||| |||| |||||||||||| || ||||| |||||| || | || |||||||| ||   |  ||| | ||| || ||||    
T  30484695 catgaactatggggtgaagatgctaaggtgttcaatcctgagagatttgcagaaggagtttcaaaagcaacaaatggtagaaattcattttttccatttg 30484794  T
Q  125 gatggggtcctagaatttgtcttggacaaaactttgccttattagaagcaaagatagcaatttcattgttgctgcagaatttctcattcaaactttctcc 224  Q
    || ||||||||||||||||| |||||||||||||| || | || ||||||||||| |||||  ||||| |  ||||| ||||||||||  ||||||||||    
T  30484795 gagggggtcctagaatttgtattggacaaaacttttccatgttggaagcaaagatggcaataacattgattttgcagcatttctcatttgaactttctcc 30484894  T
Q  225 aa 226  Q
    ||    
T  30484895 aa 30484896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 26 - 179
Target Start/End: Complemental strand, 8379113 - 8378960
Alignment:
Q  26 atgatctatggggtgatgatgcaaaggagttcaatcctgaaaggtttgctgaaggaattgcgaaggcaacaaaaggacaagtttcttatttcccttttgg 125  Q
    |||| |||||||||||||||||||||  |||||||||||| || ||||||||||||||| | || |||||||| ||   | ||   ||||| || |||||    
T  8379113 atgaactatggggtgatgatgcaaagatgttcaatcctgagagatttgctgaaggaatttccaaagcaacaaatggtagatttatatattttccatttgg 8379014  T
Q  126 atggggtcctagaatttgtcttggacaaaactttgccttattagaagcaaagat 179  Q
    | ||||||||||| ||||  | |||||||||||| || |||| |||||||||||    
T  8379013 agggggtcctagagtttgcatgggacaaaacttttccctattggaagcaaagat 8378960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 34 - 179
Target Start/End: Original strand, 30404516 - 30404661
Alignment:
Q  34 tggggtgatgatgcaaaggagttcaatcctgaaaggtttgctgaaggaattgcgaaggcaacaaaaggacaagtttcttatttcccttttggatggggtc 133  Q
    ||||| |||||||| |  ||||||||||| || || ||| | |||||||| || || ||||||||||| ||||||| || |||||| ||||| |  ||||    
T  30404516 tggggagatgatgccactgagttcaatccagagagattttcggaaggaatcgcaaaagcaacaaaaggccaagtttgttttttcccatttggttatggtc 30404615  T
Q  134 ctagaatttgtcttggacaaaactttgccttattagaagcaaagat 179  Q
    ||||| ||||  | || ||||||||||| |||||||||||||||||    
T  30404616 ctagagtttgcatggggcaaaactttgctttattagaagcaaagat 30404661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 31 - 159
Target Start/End: Original strand, 30384998 - 30385126
Alignment:
Q  31 ctatggggtgatgatgcaaaggagttcaatcctgaaaggtttgctgaaggaattgcgaaggcaacaaaaggacaagtttcttatttcccttttggatggg 130  Q
    ||||||||||||||||| ||   ||||||||||||||| |||  || ||||||| | || |||||||| |||  |||||| | ||| || ||||||||||    
T  30384998 ctatggggtgatgatgctaaaatgttcaatcctgaaagattttttggaggaatttccaaagcaacaaatggaagagtttcattttttccatttggatggg 30385097  T
Q  131 gtcctagaatttgtcttggacaaaacttt 159  Q
    ||||| |||||||  ||||||||||||||    
T  30385098 gtcctcgaatttgcattggacaaaacttt 30385126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 185
Target Start/End: Original strand, 30476523 - 30476677
Alignment:
Q  31 ctatggggtgatgatgcaaaggagttcaatcctgaaaggtttgctgaaggaattgcgaaggcaacaaaaggacaagtttcttatttcccttttggatggg 130  Q
    ||||||||||| ||||| |||| |||||||||||| || ||| ||| ||||||| | || |||||||| ||   | |||| | ||| || |||||| |||    
T  30476523 ctatggggtgaagatgctaaggtgttcaatcctgagagattttctggaggaatttccaaagcaacaaatgggagattttcattttttccatttggagggg 30476622  T
Q  131 gtcctagaatttgtcttggacaaaactttgccttattagaagcaaagatagcaat 185  Q
    |||| ||||||||  |||||||||| ||| || | || ||||||||||| |||||    
T  30476623 gtccaagaatttgcattggacaaaatttttccatgttggaagcaaagatggcaat 30476677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 179
Target Start/End: Original strand, 30395750 - 30395898
Alignment:
Q  31 ctatggggtgatgatgcaaaggagttcaatcctgaaaggtttgctgaaggaattgcgaaggcaacaaaaggacaagtttcttatttcccttttggatggg 130  Q
    |||||||| |||||||| ||   |||||||||||| || ||| | | ||||||| | || |||||||| ||   |||||| | ||| || ||||||||||    
T  30395750 ctatggggcgatgatgctaaaatgttcaatcctgagagattttccggaggaatttctaaagcaacaaatggtagagtttcattttttccatttggatggg 30395849  T
Q  131 gtcctagaatttgtcttggacaaaactttgccttattagaagcaaagat 179  Q
    |||| ||||||||  |||||||||||||| || || | |||||||||||    
T  30395850 gtccaagaatttgcattggacaaaacttttccctaatggaagcaaagat 30395898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 185
Target Start/End: Complemental strand, 23783464 - 23783310
Alignment:
Q  31 ctatggggtgatgatgcaaaggagttcaatcctgaaaggtttgctgaaggaattgcgaaggcaacaaaaggacaagtttcttatttcccttttggatggg 130  Q
    ||||||||||||||||| |||   ||||||||||| || ||| |||  |||||| | || |||||||| ||   | |||| ||||| || ||||||  ||    
T  23783464 ctatggggtgatgatgctaagattttcaatcctgagagattttctggtggaatttccaaagcaacaaacggtagattttcatattttccgtttggagcgg 23783365  T
Q  131 gtcctagaatttgtcttggacaaaactttgccttattagaagcaaagatagcaat 185  Q
    |||||||||| ||  |||||||||||||| || | || ||||||||||| |||||    
T  23783364 gtcctagaatctgcattggacaaaacttttccctgttggaagcaaagatggcaat 23783310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 185
Target Start/End: Original strand, 30431413 - 30431470
Alignment:
Q  128 ggggtcctagaatttgtcttggacaaaactttgccttattagaagcaaagatagcaat 185  Q
    ||||||||||||||||  |||||||||||||| || | || ||||||||||| |||||    
T  30431413 ggggtcctagaatttgaattggacaaaacttttccatgttggaagcaaagatggcaat 30431470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 74 - 173
Target Start/End: Original strand, 11019478 - 11019577
Alignment:
Q  74 ctgaaggaattgcgaaggcaacaaaaggacaagtttcttatttcccttttggatggggtcctagaatttgtcttggacaaaactttgccttattagaagc 173  Q
    |||||||| || | ||||||||||| ||  |||||||||| || ||||||||||||||||| ||| ||||| |||||||||||||||  |||||||||||    
T  11019478 ctgaaggagtttcaaaggcaacaaatggcaaagtttcttacttgccttttggatggggtccaagactttgtattggacaaaactttggtttattagaagc 11019577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 225
Target Start/End: Complemental strand, 41626956 - 41626763
Alignment:
Q  32 tatggggtgatgatgcaaaggagttcaatcctgaaaggtttgctgaaggaattgcgaaggcaacaaaaggacaagtttcttatttcccttttggatgggg 131  Q
    |||||||||||||||| ||   ||||||||||||||| ||| ||| ||||||| | || ||||| || ||   |||||| | ||| || |||||||||||    
T  41626956 tatggggtgatgatgctaaaatgttcaatcctgaaagattttctggaggaatttccaaagcaacgaacggtagagtttcattttttccatttggatgggg 41626857  T
Q  132 tcctagaatttgtcttggacaaaactttgccttattagaagcaaagatagcaatttcattgttgctgcagaatttctcattcaaactttctcca 225  Q
    |||||| || ||  |||| ||||||||| |  |||| ||||||||||| |||||  ||||| |  | ||| ||||||||||  |||||||||||    
T  41626856 tcctaggatctgcattgggcaaaacttttctctattggaagcaaagatggcaatgacattgattttacagcatttctcatttcaactttctcca 41626763  T

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