View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9667_low_10 (Length: 457)

Name: NF9667_low_10
Description: NF9667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9667_low_10
NF9667_low_10
[»] chr6 (27 HSPs)
chr6 (15-438)||(5344686-5345109)
chr6 (62-438)||(5128297-5128673)
chr6 (50-437)||(5690027-5690414)
chr6 (70-437)||(5383152-5383519)
chr6 (62-437)||(5073788-5074163)
chr6 (50-437)||(5278392-5278779)
chr6 (50-437)||(5176565-5176952)
chr6 (62-410)||(5096561-5096909)
chr6 (65-437)||(5447413-5447785)
chr6 (62-437)||(5102494-5102869)
chr6 (62-437)||(5433861-5434236)
chr6 (62-437)||(5354494-5354869)
chr6 (62-437)||(5066574-5066949)
chr6 (62-437)||(5425736-5426111)
chr6 (62-437)||(5157508-5157883)
chr6 (62-437)||(5181807-5182182)
chr6 (62-437)||(5284269-5284644)
chr6 (100-437)||(5350220-5350557)
chr6 (62-437)||(5370397-5370772)
chr6 (15-183)||(5243746-5243914)
chr6 (145-437)||(5257297-5257589)
chr6 (179-370)||(5447050-5447241)
chr6 (73-283)||(5179521-5179731)
chr6 (73-283)||(5281280-5281490)
chr6 (62-377)||(5396836-5397151)
chr6 (225-434)||(5243910-5244119)
chr6 (292-437)||(5147006-5147151)
[»] chr4 (22 HSPs)
chr4 (62-437)||(4344472-4344847)
chr4 (65-437)||(4320502-4320874)
chr4 (62-437)||(4360903-4361278)
chr4 (62-437)||(4123819-4124194)
chr4 (62-437)||(4335171-4335546)
chr4 (124-410)||(4133367-4133651)
chr4 (66-311)||(6498410-6498655)
chr4 (66-311)||(6651019-6651264)
chr4 (94-314)||(6621419-6621639)
chr4 (66-309)||(6545332-6545575)
chr4 (113-314)||(7885322-7885523)
chr4 (73-307)||(6752916-6753150)
chr4 (66-314)||(6532116-6532364)
chr4 (66-290)||(6675676-6675900)
chr4 (70-314)||(6728355-6728599)
chr4 (70-196)||(6588084-6588210)
chr4 (66-314)||(6815419-6815667)
chr4 (62-257)||(6758730-6758925)
chr4 (73-314)||(6796736-6796977)
chr4 (70-311)||(6837226-6837467)
chr4 (334-437)||(6532384-6532487)
chr4 (97-152)||(6822802-6822857)
[»] scaffold0294 (1 HSPs)
scaffold0294 (62-437)||(8780-9155)
[»] chr5 (7 HSPs)
chr5 (62-437)||(8877435-8877810)
chr5 (64-155)||(20838740-20838831)
chr5 (64-152)||(12599054-12599142)
chr5 (64-155)||(20812385-20812476)
chr5 (66-155)||(15803019-15803108)
chr5 (238-284)||(20812256-20812302)
chr5 (62-152)||(30417931-30418021)
[»] chr7 (3 HSPs)
chr7 (62-437)||(36213709-36214084)
chr7 (62-434)||(18935215-18935587)
chr7 (112-434)||(34724516-34724838)
[»] chr3 (6 HSPs)
chr3 (62-437)||(47986752-47987107)
chr3 (62-437)||(47996039-47996394)
chr3 (62-437)||(48005326-48005681)
chr3 (62-437)||(48014611-48014966)
chr3 (62-163)||(32411083-32411184)
chr3 (62-155)||(6905806-6905899)
[»] chr2 (1 HSPs)
chr2 (60-358)||(22584092-22584390)
[»] scaffold0813 (1 HSPs)
scaffold0813 (66-311)||(4710-4955)
[»] chr8 (14 HSPs)
chr8 (63-281)||(3286516-3286734)
chr8 (64-163)||(3262629-3262727)
chr8 (65-153)||(3325003-3325091)
chr8 (62-155)||(3391536-3391629)
chr8 (64-284)||(7164654-7164874)
chr8 (64-155)||(31175955-31176046)
chr8 (65-155)||(3314966-3315056)
chr8 (62-155)||(3364277-3364370)
chr8 (62-139)||(3407323-3407400)
chr8 (64-155)||(3398522-3398613)
chr8 (62-152)||(3267198-3267288)
chr8 (238-284)||(3398696-3398742)
chr8 (238-283)||(3364149-3364194)
chr8 (238-283)||(3391712-3391757)
[»] scaffold0286 (1 HSPs)
scaffold0286 (94-311)||(6611-6828)
[»] scaffold0468 (1 HSPs)
scaffold0468 (62-155)||(6146-6239)
[»] scaffold0373 (1 HSPs)
scaffold0373 (70-311)||(9642-9883)


Alignment Details
Target: chr6 (Bit Score: 420; Significance: 0; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 15 - 438
Target Start/End: Complemental strand, 5345109 - 5344686
Alignment:
Q  15 cagagatgacattgcaggagatatttgaacttcgaatgaaagagaacttgttggtgacatccaagaccagatgatagatggaaatacatcgcgtgagaat 114  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5345109 cagagatgacatcgcaggagatatttgaacttcgaatgaaagagaacttgttggtgacatccaagaccagatgatagatggaaatacatcgcgtgagaat 5345010  T
Q  115 ccttcatagccacacagagaaatatatccaatgctttttgaccttactactaaaaagggaacttttgttattgcagtgttatttgcgatcagaatggtta 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5345009 ccttcatagccacacagagaaatatatccaatgctttttgaccttactactaaaaagggaacttttgttattgcagtgttatttgcgatcagaatggtta 5344910  T
Q  215 aagatttcatttgttctaagtcctcttccaacttgtcaatctttaaacaacccgaaagaatgagagtttttagagaattcaacttatagatgcttcttgg 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5344909 aagatttcatttgttctaagtcctcttccaacttgtcaatctttaaacaacccgaaagaatgagagtttttagagaattcaacttatagatgcttcttgg 5344810  T
Q  315 caggctacataggctaatacagtcttccaaattaatgagaagaattttcttgagatctccaatgctatgagaaatctcacacaaacttggacaatccacg 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5344809 caggctacataggctaatacagtcttccaaattaatgagaagaattttcttgagatctccaatgctatgagaaatctcacacaaacttggacaatccacg 5344710  T
Q  415 agtactaacttttcaagattaggt 438  Q
    ||||||||||||||||||||||||    
T  5344709 agtactaacttttcaagattaggt 5344686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 62 - 438
Target Start/End: Original strand, 5128297 - 5128673
Alignment:
Q  62 ttgttggtgacatccaagaccagatgatagatggaaatacatcgcgtgagaatccttcatagccacacagagaaatatatccaatgctttttgaccttac 161  Q
    ||||||||||||||||||||||||||||||||||||| ||||| | ||| |||||||||| ||| |||||||| ||||||||||||||||||||||||||    
T  5128297 ttgttggtgacatccaagaccagatgatagatggaaacacatcacttgaaaatccttcatggccgcacagagagatatatccaatgctttttgaccttac 5128396  T
Q  162 tactaaaaagggaacttttgttattgcagtgttatttgcgatcagaatggttaaagatttcatttgttctaagtcctcttccaacttgtcaatctttaaa 261  Q
    |||| ||||||| ||| || ||||||||||||||||||| | |||| | ||||| |||| ||||||||| |||||||||||||||||||||||| ||| |    
T  5128397 tactgaaaagggtactctttttattgcagtgttatttgcaagcagagttgttaatgattccatttgttccaagtcctcttccaacttgtcaatcattata 5128496  T
Q  262 caacccgaaagaatgagagtttttagagaattcaacttatagatgcttcttggcaggctacataggctaatacagtcttccaaattaatgagaagaattt 361  Q
    ||||| ||||||||||||||||| | ||| ||||||||||||||||||||||| ||||||||||||||||| || ||||||||||| || ||||||||||    
T  5128497 caaccagaaagaatgagagttttcaaagatttcaacttatagatgcttcttgggaggctacataggctaatgcaatcttccaaatttatcagaagaattt 5128596  T
Q  362 tcttgagatctccaatgctatgagaaatctcacacaaacttggacaatccacgagtactaacttttcaagattaggt 438  Q
    | ||||||| ||| ||||||  ||||| |||| ||||  ||| ||||||   |||||||| ||||||||||||||||    
T  5128597 tattgagatgtccgatgctagtagaaacctcagacaacattgaacaatctttgagtactagcttttcaagattaggt 5128673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 50 - 437
Target Start/End: Original strand, 5690027 - 5690414
Alignment:
Q  50 atgaaagagaacttgttggtgacatccaagaccagatgatagatggaaatacatcgcgtgagaatccttcatagccacacagagaaatatatccaatgct 149  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||  || |||||||||||||| ||||||||    
T  5690027 atgaaagagcacttgttggtgacatccaagaccaaatgatagatggaaatatatcacgtgagaatccttcatgtccgcacagagaaatatacccaatgct 5690126  T
Q  150 ttttgaccttactactaaaaagggaacttttgttattgcagtgttatttgcgatcagaatggttaaagatttcatttgttctaagtcctcttccaacttg 249  Q
    |||||||||||| | | ||||||| ||  |||||||| |||||| |||||| | |||| |||||||||||| ||||||||| ||||||||||||||||||    
T  5690127 ttttgaccttacaattgaaaagggcacacttgttattccagtgtcatttgcaagcagagtggttaaagattccatttgttccaagtcctcttccaacttg 5690226  T
Q  250 tcaatctttaaacaacccgaaagaatgagagtttttagagaattcaacttatagatgcttcttggcaggctacataggctaatacagtcttccaaattaa 349  Q
    | |||| || |||| || ||||||||||||||||| ||||| ||||||||||||||||||||||| ||| || | ||||||||||| ||||||||||| |    
T  5690227 ttaatcattgaacacccggaaagaatgagagttttcagagatttcaacttatagatgcttcttggaaggttagaaaggctaatacaatcttccaaattta 5690326  T
Q  350 tgagaagaattttcttgagatctccaatgctatgagaaatctcacacaaacttggacaatccacgagtactaacttttcaagattagg 437  Q
    | ||||||||||| | ||||| |||||||||||| |||| ||||| ||| |||||||||||   ||||| || |||||||||||||||    
T  5690327 tcagaagaattttgtcgagatgtccaatgctatgggaaacctcacgcaaccttggacaatctttgagtattagcttttcaagattagg 5690414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 70 - 437
Target Start/End: Complemental strand, 5383519 - 5383152
Alignment:
Q  70 gacatccaagaccagatgatagatggaaatacatcgcgtgagaatccttcatagccacacagagaaatatatccaatgctttttgaccttactactaaaa 169  Q
    ||||||||||||   ||||| |||||||| ||||| |||||||||||||||| ||| |||| |||||||||| |||| |||||||||||||  | | |||    
T  5383519 gacatccaagacttaatgatggatggaaacacatcacgtgagaatccttcatggccgcacaaagaaatatatacaatactttttgaccttaaaattgaaa 5383420  T
Q  170 agggaacttttgttattgcagtgttatttgcgatcagaatggttaaagatttcatttgttctaagtcctcttccaacttgtcaatctttaaacaacccga 269  Q
     ||||||| |||||||||||||||||| ||| | || | | |||||||||| ||||||||||| ||||||||||||||||  ||||||||||||||| ||    
T  5383419 ggggaactcttgttattgcagtgttatctgcaagcaaagtagttaaagattccatttgttctatgtcctcttccaacttggtaatctttaaacaaccaga 5383320  T
Q  270 aagaatgagagtttttagagaattcaacttatagatgcttcttggcaggctacataggctaatacagtcttccaaattaatgagaagaattttcttgaga 369  Q
    ||||||||||||||| ||||| ||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  5383319 aagaatgagagttttcagagatttcaacttataaatgcttcttgggaggctacataggctaacacagtcttccaaattaatcagaagaattttcttgaga 5383220  T
Q  370 tctccaatgctatgagaaatctcacacaaacttggacaatccacgagtactaacttttcaagattagg 437  Q
    |||||||||||| |||||| |||  |||| || ||||||||  ||||||||| |||||||||||||||    
T  5383219 tctccaatgctaggagaaacctcggacaacctcggacaatctgcgagtactagcttttcaagattagg 5383152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 62 - 437
Target Start/End: Original strand, 5073788 - 5074163
Alignment:
Q  62 ttgttggtgacatccaagaccagatgatagatggaaatacatcgcgtgagaatccttcatagccacacagagaaatatatccaatgctttttgaccttac 161  Q
    |||| ||||||||||||||||| ||||| ||||| || ||||| |||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||    
T  5073788 ttgtcggtgacatccaagaccaaatgatcgatgggaacacatcacgtgagaatccttcatagccgcacaaagaaatatatccaatgcttttcgaccttac 5073887  T
Q  162 tactaaaaagggaacttttgttattgcagtgttatttgcgatcagaatggttaaagatttcatttgttctaagtcctcttccaacttgtcaatctttaaa 261  Q
    |||| ||||||| ||| |||||||||| ||||||||||| |||||| ||||||||||| |||| |||||||||||||||||||||||||||||| || ||    
T  5073888 tactgaaaagggcactcttgttattgcggtgttatttgctatcagagtggttaaagatgtcatctgttctaagtcctcttccaacttgtcaatcattgaa 5073987  T
Q  262 caacccgaaagaatgagagtttttagagaattcaacttatagatgcttcttggcaggctacataggctaatacagtcttccaaattaatgagaagaattt 361  Q
    || || ||||||||||||||||||||||| |||||||||||||| |||||||| |||||    || | |||||| ||||||||||| || ||||||||||    
T  5073988 cacccggaaagaatgagagtttttagagatttcaacttatagatacttcttggaaggctctgaagaccaatacaatcttccaaatttatcagaagaattt 5074087  T
Q  362 tcttgagatctccaatgctatgagaaatctcacacaaacttggacaatccacgagtactaacttttcaagattagg 437  Q
    | ||||||| | |||| |||||||||| |||  |||| |||||||||||   ||||||||  | ||||||||||||    
T  5074088 tattgagatgttcaatactatgagaaacctctgacaaccttggacaatctgtgagtactagttgttcaagattagg 5074163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 50 - 437
Target Start/End: Complemental strand, 5278779 - 5278392
Alignment:
Q  50 atgaaagagaacttgttggtgacatccaagaccagatgatagatggaaatacatcgcgtgagaatccttcatagccacacagagaaatatatccaatgct 149  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||||| ||| |||||||||||||||||||| |||| ||| || |||||||||||    
T  5278779 atgaaagagaacttgttggtgacatccaagaccaaatgattgatggaaatatatcacgtgagaatccttcatagccgcacaaagagatgtatccaatgct 5278680  T
Q  150 ttttgaccttactactaaaaagggaacttttgttattgcagtgttatttgcgatcagaatggttaaagatttcatttgttctaagtcctcttccaacttg 249  Q
    ||||||||||||||   | ||||| ||| |||||||||||||||||||||| | |||| | |||||||||| ||||||||| ||||||||||||||||||    
T  5278679 ttttgaccttactatagacaagggcactcttgttattgcagtgttatttgcaagcagagtagttaaagattccatttgttccaagtcctcttccaacttg 5278580  T
Q  250 tcaatctttaaacaacccgaaagaatgagagtttttagagaattcaacttatagatgcttcttggcaggctacataggctaatacagtcttccaaattaa 349  Q
    |||||| |  |||| || ||||||||||| ||||| | ||| |||||||||||||| |||||||| || ||    ||||||||||| |||||||| || |    
T  5278579 tcaatcatcgaacacccagaaagaatgagtgttttcaaagatttcaacttatagatacttcttggaagactctgaaggctaatacaatcttccaagttta 5278480  T
Q  350 tgagaagaattttcttgagatctccaatgctatgagaaatctcacacaaacttggacaatccacgagtactaacttttcaagattagg 437  Q
    | ||||||||||| | ||||| ||||||||||||||||| ||||||||| ||||| ||||| | |||||  | |||||||||||||||    
T  5278479 tcagaagaattttatcgagatatccaatgctatgagaaacctcacacaaccttgggcaatctatgagtataagcttttcaagattagg 5278392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 50 - 437
Target Start/End: Complemental strand, 5176952 - 5176565
Alignment:
Q  50 atgaaagagaacttgttggtgacatccaagaccagatgatagatggaaatacatcgcgtgagaatccttcatagccacacagagaaatatatccaatgct 149  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||||| ||| |||||||||||||||||||| |||| ||| || |||||||||||    
T  5176952 atgaaagagaacttgttggtgacatccaagaccaaatgattgatggaaatatatcacgtgagaatccttcatagccgcacaaagagatgtatccaatgct 5176853  T
Q  150 ttttgaccttactactaaaaagggaacttttgttattgcagtgttatttgcgatcagaatggttaaagatttcatttgttctaagtcctcttccaacttg 249  Q
    |||||||||||||| | | ||||| ||| |||||||||||||||||||||| | |||| | |||||||||| ||||||||| ||||||||||||||||||    
T  5176852 ttttgaccttactattgacaagggcactcttgttattgcagtgttatttgcaagcagagtagttaaagattccatttgttccaagtcctcttccaacttg 5176753  T
Q  250 tcaatctttaaacaacccgaaagaatgagagtttttagagaattcaacttatagatgcttcttggcaggctacataggctaatacagtcttccaaattaa 349  Q
    |||||| |  |||| || ||||||||||| ||||| | ||| |||||||||||||| |||||||| || ||    ||||||||||| |||||||| || |    
T  5176752 tcaatcatcgaacacccagaaagaatgagtgttttcaaagatttcaacttatagatacttcttggaagactctgaaggctaatacaatcttccaagttta 5176653  T
Q  350 tgagaagaattttcttgagatctccaatgctatgagaaatctcacacaaacttggacaatccacgagtactaacttttcaagattagg 437  Q
    | ||||||||||| | ||||| |||||||||||| |||| ||||| ||| ||||| ||||| | |||||  | |||||||||||||||    
T  5176652 tcagaagaattttatcgagatgtccaatgctatgggaaacctcacgcaaccttgggcaatctatgagtataagcttttcaagattagg 5176565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 62 - 410
Target Start/End: Complemental strand, 5096909 - 5096561
Alignment:
Q  62 ttgttggtgacatccaagaccagatgatagatggaaatacatcgcgtgagaatccttcatagccacacagagaaatatatccaatgctttttgaccttac 161  Q
    |||||||||||| |||||||||||||||||| ||||| ||||| ||||| |||||||||| |||||| |||||||| |||||||||||||||||||||||    
T  5096909 ttgttggtgacaaccaagaccagatgatagacggaaacacatcacgtgaaaatccttcatggccacatagagaaatgtatccaatgctttttgaccttac 5096810  T
Q  162 tactaaaaagggaacttttgttattgcagtgttatttgcgatcagaatggttaaagatttcatttgttctaagtcctcttccaacttgtcaatctttaaa 261  Q
    |||| ||||||| ||| || ||||| ||||||||||||| | |||||||||||| |||| ||||||||||| |||||||||||||| ||||||| ||| |    
T  5096809 tactgaaaagggtactctttttattccagtgttatttgcaagcagaatggttaatgattccatttgttctatgtcctcttccaactcgtcaatcattata 5096710  T
Q  262 caacccgaaagaatgagagtttttagagaattcaacttatagatgcttcttggcaggctacataggctaatacagtcttccaaattaatgagaagaattt 361  Q
    || || ||||||||||||||||| ||||| ||||||||||||||||||| ||| |||||||  ||||||| ||| ||||||||||  || ||||||||||    
T  5096709 cacccagaaagaatgagagttttcagagatttcaacttatagatgcttcctggaaggctacgaaggctaacacaatcttccaaatctattagaagaattt 5096610  T
Q  362 tcttgagatctccaatgctatgagaaatctcacacaaacttggacaatc 410  Q
       |||||| |||||||||| |||||| |||| ||||  ||||||||||    
T  5096609 cactgagatttccaatgctaggagaaacctcagacaacattggacaatc 5096561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 65 - 437
Target Start/End: Complemental strand, 5447785 - 5447413
Alignment:
Q  65 ttggtgacatccaagaccagatgatagatggaaatacatcgcgtgagaatccttcatagccacacagagaaatatatccaatgctttttgaccttactac 164  Q
    ||||||||||||||||||  || ||||||||||| |||||  | ||| |||||||| | || |||| |||||||||||||||||| || ||||| |||||    
T  5447785 ttggtgacatccaagaccgaataatagatggaaacacatcatgcgaggatccttcaaatccgcacaaagaaatatatccaatgctcttcgacctaactac 5447686  T
Q  165 taaaaagggaacttttgttattgcagtgttatttgcgatcagaatggttaaagatttcatttgttctaagtcctcttccaacttgtcaatctttaaacaa 264  Q
      ||||||| ||| ||||||||| ||| |||||||| | |||| |||||||||||| ||| ||||| ||||||||||||| |||||||||||||||||||    
T  5447685 cgaaaagggcactgttgttattgaagtattatttgcaagcagagtggttaaagattccatctgttccaagtcctcttccagcttgtcaatctttaaacaa 5447586  T
Q  265 cccgaaagaatgagagtttttagagaattcaacttatagatgcttcttggcaggctacataggctaatacagtcttccaaattaatgagaagaattttct 364  Q
    || ||||||||||||||||| | ||| ||||||||||||||||||||||| ||| ||| ||||| |||||| ||||||||||| || ||||||||||| |    
T  5447585 ccagaaagaatgagagttttcaaagatttcaacttatagatgcttcttgggaggttacctaggccaatacaatcttccaaatttatcagaagaattttat 5447486  T
Q  365 tgagatctccaatgctatgagaaatctcacacaaacttggacaatccacgagtactaacttttcaagattagg 437  Q
    |||||| |||||||||| |||||| |||| ||||  ||||||||||   |||||||| |||||||||||||||    
T  5447485 tgagatgtccaatgctaggagaaacctcagacaacattggacaatctttgagtactagcttttcaagattagg 5447413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 62 - 437
Target Start/End: Original strand, 5102494 - 5102869
Alignment:
Q  62 ttgttggtgacatccaagaccagatgatagatggaaatacatcgcgtgagaatccttcatagccacacagagaaatatatccaatgctttttgaccttac 161  Q
    ||||||||||||||||||||||||||||||||||||| |||||  |||| | ||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  5102494 ttgttggtgacatccaagaccagatgatagatggaaacacatcatgtgaaagtccttcatagccacatagagagatatatccaatgctttttgaccttac 5102593  T
Q  162 tactaaaaagggaacttttgttattgcagtgttatttgcgatcagaatggttaaagatttcatttgttctaagtcctcttccaacttgtcaatctttaaa 261  Q
    |||| ||||||| ||| |||||||||||||||| ||||| |  ||| ||||||| |||| ||||||||| ||||| |||||||||||||||||| |||||    
T  5102594 tactgaaaagggcactgttgttattgcagtgttgtttgctagaagagtggttaatgattccatttgttccaagtcgtcttccaacttgtcaatcattaaa 5102693  T
Q  262 caacccgaaagaatgagagtttttagagaattcaacttatagatgcttcttggcaggctacataggctaatacagtcttccaaattaatgagaagaattt 361  Q
    || || |||||||||||  |||| | ||| ||||||||||||||||||||||| |||||||  ||||||| ||| ||||||||||  || ||||| ||||    
T  5102694 cacccagaaagaatgagtattttcaaagatttcaacttatagatgcttcttggaaggctacgaaggctaacacaatcttccaaatctattagaagtattt 5102793  T
Q  362 tcttgagatctccaatgctatgagaaatctcacacaaacttggacaatccacgagtactaacttttcaagattagg 437  Q
       |||||||||||||| || || ||| |||| ||||  ||||||||||   |||||| | ||| |||||||||||    
T  5102794 cagtgagatctccaatggtaggacaaacctcagacaacattggacaatctttgagtaccagcttctcaagattagg 5102869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 62 - 437
Target Start/End: Complemental strand, 5434236 - 5433861
Alignment:
Q  62 ttgttggtgacatccaagaccagatgatagatggaaatacatcgcgtgagaatccttcatagccacacagagaaatatatccaatgctttttgaccttac 161  Q
    ||||||||||||||||||||   |||||| ||||||||| |||| |||||||||||||||| || |||| ||| |||||||||||||||||||| || |     
T  5434236 ttgttggtgacatccaagactgaatgataaatggaaataaatcgtgtgagaatccttcataaccgcacaaagagatatatccaatgctttttgatctcag 5434137  T
Q  162 tactaaaaagggaacttttgttattgcagtgttatttgcgatcagaatggttaaagatttcatttgttctaagtcctcttccaacttgtcaatctttaaa 261  Q
    |||| |||  || ||| || ||||||||||||||||||| | |||| |||||||||||| ||| ||||| ||||| |||||||| |||||||||||||||    
T  5434136 tactgaaagaggcactctttttattgcagtgttatttgcaagcagagtggttaaagattccatatgttccaagtcatcttccaaattgtcaatctttaaa 5434037  T
Q  262 caacccgaaagaatgagagtttttagagaattcaacttatagatgcttcttggcaggctacataggctaatacagtcttccaaattaatgagaagaattt 361  Q
    || || | ||| ||||||||||| | ||| ||||||||||| ||||||||||| ||| ||||||||| |||||| ||||||||||| || ||||||||||    
T  5434036 cagccagtaaggatgagagttttcaaagatttcaacttatatatgcttcttgggaggttacataggccaatacaatcttccaaatttatcagaagaattt 5433937  T
Q  362 tcttgagatctccaatgctatgagaaatctcacacaaacttggacaatccacgagtactaacttttcaagattagg 437  Q
      |||||||  ||||||||| ||||||||||| | | ||||||||||||   ||||||||||||||||||||||||    
T  5433936 cattgagatggccaatgctaggagaaatctcagaaagacttggacaatctgtgagtactaacttttcaagattagg 5433861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 62 - 437
Target Start/End: Original strand, 5354494 - 5354869
Alignment:
Q  62 ttgttggtgacatccaagaccagatgatagatggaaatacatcgcgtgagaatccttcatagccacacagagaaatatatccaatgctttttgaccttac 161  Q
    |||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||| | ||||||||||||||||||||| || || ||    
T  5354494 ttgttggtgacatccaagaccaaatgatagatggaaacacatcacgtgagaatccttcatagccacataaagaaatatatccaatgcttttggaactaac 5354593  T
Q  162 tactaaaaagggaacttttgttattgcagtgttatttgcgatcagaatggttaaagatttcatttgttctaagtcctcttccaacttgtcaatctttaaa 261  Q
    || | | ||||| ||| ||||||||||||||| |||||| | |||  |||||||||||| || |||||| |||||||||||||||||||| | ||||  |    
T  5354594 tattgagaagggtactcttgttattgcagtgtcatttgcaagcagggtggttaaagattccaattgttccaagtcctcttccaacttgtctaacttttta 5354693  T
Q  262 caacccgaaagaatgagagtttttagagaattcaacttatagatgcttcttggcaggctacataggctaatacagtcttccaaattaatgagaagaattt 361  Q
    ||||| ||||||||||||||||| | ||| |||||||| |||||||||||||| |||||| | ||| |||| |||||||  ||||| || ||||||||||    
T  5354694 caaccagaaagaatgagagttttcaaagatttcaacttgtagatgcttcttgggaggctagaaaggttaatgcagtctttgaaatttatcagaagaattt 5354793  T
Q  362 tcttgagatctccaatgctatgagaaatctcacacaaacttggacaatccacgagtactaacttttcaagattagg 437  Q
    | ||||||| |||||||||  ||||||  ||| | ||  ||||||||||   |||||| | |||||||||||||||    
T  5354794 tattgagatgtccaatgcttggagaaacttcagataacattggacaatctttgagtacaagcttttcaagattagg 5354869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 62 - 437
Target Start/End: Original strand, 5066574 - 5066949
Alignment:
Q  62 ttgttggtgacatccaagaccagatgatagatggaaatacatcgcgtgagaatccttcatagccacacagagaaatatatccaatgctttttgaccttac 161  Q
    |||||||||||||||||||| | |||||||||||||| ||||| || ||||||||||||||||| |||| ||| || |||||||||||||||||||||||    
T  5066574 ttgttggtgacatccaagacaaaatgatagatggaaacacatcacgcgagaatccttcatagccgcacaaagagatgtatccaatgctttttgaccttac 5066673  T
Q  162 tactaaaaagggaacttttgttattgcagtgttatttgcgatcagaatggttaaagatttcatttgttctaagtcctcttccaacttgtcaatctttaaa 261  Q
    |||| ||||||| | | || |||||||||| |||| ||| | |||| |||||||||||| ||||||||||| ||||||||| |||||||||||| ||| |    
T  5066674 tactgaaaagggtattctttttattgcagttttatgtgcaagcagagtggttaaagattccatttgttctatgtcctcttctaacttgtcaatcattata 5066773  T
Q  262 caacccgaaagaatgagagtttttagagaattcaacttatagatgcttcttggcaggctacataggctaatacagtcttccaaattaatgagaagaattt 361  Q
    || || ||||||||||||||||| ||||| ||||||||||||||||||||||| ||| |||  ||||||| ||| ||||||||||  || ||||||||||    
T  5066774 cacccagaaagaatgagagttttaagagatttcaacttatagatgcttcttggaaggttacgaaggctaacacaatcttccaaatctattagaagaattt 5066873  T
Q  362 tcttgagatctccaatgctatgagaaatctcacacaaacttggacaatccacgagtactaacttttcaagattagg 437  Q
       |||| | ||| ||  || |||||| |||  ||||  ||||||||||   |||||||| |||||||||||||||    
T  5066874 cactgagttttcctattgtaggagaaacctcggacaatattggacaatctttgagtactagcttttcaagattagg 5066949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 62 - 437
Target Start/End: Complemental strand, 5426111 - 5425736
Alignment:
Q  62 ttgttggtgacatccaagaccagatgatagatggaaatacatcgcgtgagaatccttcatagccacacagagaaatatatccaatgctttttgaccttac 161  Q
    |||||||||||||||||||||| ||||| | |||||| ||||| ||||| |||||||||||||| |||| ||| || ||||||||||||| |||| ||||    
T  5426111 ttgttggtgacatccaagaccaaatgatcgctggaaacacatcacgtgaaaatccttcatagccgcacaaagagatgtatccaatgctttgtgacattac 5426012  T
Q  162 tactaaaaagggaacttttgttattgcagtgttatttgcgatcagaatggttaaagatttcatttgttctaagtcctcttccaacttgtcaatctttaaa 261  Q
     ||| ||||||| ||| || |||||||||| |||| ||| |||||| |||||||||||| ||||||||||| |||||||||||||||||||||| ||| |    
T  5426011 cactgaaaagggtactctttttattgcagttttatgtgcaatcagagtggttaaagattccatttgttctatgtcctcttccaacttgtcaatcattaca 5425912  T
Q  262 caacccgaaagaatgagagtttttagagaattcaacttatagatgcttcttggcaggctacataggctaatacagtcttccaaattaatgagaagaattt 361  Q
    || || ||||||||||||||||| ||||| ||||||||||||||| ||||||| |||||    |||| || ||| ||||| ||||| || ||||||||||    
T  5425911 cacccagaaagaatgagagttttcagagatttcaacttatagatgtttcttggaaggctttgaaggcgaacacaatcttctaaatttattagaagaattt 5425812  T
Q  362 tcttgagatctccaatgctatgagaaatctcacacaaacttggacaatccacgagtactaacttttcaagattagg 437  Q
       |||||| |||||||||| ||||||||||| ||||  ||||||||||   ||| || | |||||||||||||||    
T  5425811 ctctgagatttccaatgctaggagaaatctcagacaacattggacaatctttgagcaccagcttttcaagattagg 5425736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 62 - 437
Target Start/End: Original strand, 5157508 - 5157883
Alignment:
Q  62 ttgttggtgacatccaagaccagatgatagatggaaatacatcgcgtgagaatccttcatagccacacagagaaatatatccaatgctttttgaccttac 161  Q
    |||||||||||||||||||||| |||||||||||||| ||||| || || |||||||||||||| | || ||| || |||||||||||||||||||||||    
T  5157508 ttgttggtgacatccaagaccaaatgatagatggaaacacatcacgagaaaatccttcatagccgcccaaagagatgtatccaatgctttttgaccttac 5157607  T
Q  162 tactaaaaagggaacttttgttattgcagtgttatttgcgatcagaatggttaaagatttcatttgttctaagtcctcttccaacttgtcaatctttaaa 261  Q
    |||| ||||||| ||| || ||||||||||||  | ||| | |||| |||||||||||| ||| ||||||| |||||||||||||||||||||| ||| |    
T  5157608 tactgaaaagggtactctttttattgcagtgtcgtgtgcaagcagagtggttaaagattccatctgttctatgtcctcttccaacttgtcaatcattata 5157707  T
Q  262 caacccgaaagaatgagagtttttagagaattcaacttatagatgcttcttggcaggctacataggctaatacagtcttccaaattaatgagaagaattt 361  Q
    || || |||||||| | | |||| ||||| ||||||||||||||||||||||| ||||| |  ||||||| ||| ||||||||||  || ||||||||||    
T  5157708 caccctgaaagaattaaaattttcagagatttcaacttatagatgcttcttggaaggcttcgaaggctaacacaatcttccaaatctattagaagaattt 5157807  T
Q  362 tcttgagatctccaatgctatgagaaatctcacacaaacttggacaatccacgagtactaacttttcaagattagg 437  Q
       |||||| |||||||||| |||||| |||| ||||  ||||||||||   |||||| | ||| |||||||||||    
T  5157808 cactgagatttccaatgctaggagaaacctcagacaacattggacaatctttgagtaccagcttctcaagattagg 5157883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 62 - 437
Target Start/End: Original strand, 5181807 - 5182182
Alignment:
Q  62 ttgttggtgacatccaagaccagatgatagatggaaatacatcgcgtgagaatccttcatagccacacagagaaatatatccaatgctttttgaccttac 161  Q
    |||| ||||||||||||||||| ||||| | |||||| |||||  |||||||||||||||| |||||||  ||||||||| |||||||||| ||| ||||    
T  5181807 ttgtcggtgacatccaagaccaaatgatcgctggaaacacatcatgtgagaatccttcatatccacacaaggaaatatatgcaatgcttttggactttac 5181906  T
Q  162 tactaaaaagggaacttttgttattgcagtgttatttgcgatcagaatggttaaagatttcatttgttctaagtcctcttccaacttgtcaatctttaaa 261  Q
    |||| |||| || ||| |||||||||||||||||||||| ||||   |||||||||||||||||||||| || ||||||||||||||||||||| |||||    
T  5181907 tactgaaaacggcactcttgttattgcagtgttatttgcaatcaatgtggttaaagatttcatttgttccaaatcctcttccaacttgtcaatcattaaa 5182006  T
Q  262 caacccgaaagaatgagagtttttagagaattcaacttatagatgcttcttggcaggctacataggctaatacagtcttccaaattaatgagaagaattt 361  Q
    || || |||||||||||||| ||||  || ||||| ||||||||||||||||| |||||    |||||||| || ||||||||||| || | ||| ||||    
T  5182007 cacccagaaagaatgagagtgtttaatgatttcaaattatagatgcttcttggaaggctttgaaggctaatgcaatcttccaaatttatcaaaagtattt 5182106  T
Q  362 tcttgagatctccaatgctatgagaaatctcacacaaacttggacaatccacgagtactaacttttcaagattagg 437  Q
    | |||||||||||||| || || ||||  ||| ||||  | ||||||||   ||||||||||| |||||| |||||    
T  5182107 tattgagatctccaatactttgggaaacttcagacaacttcggacaatctgtgagtactaactgttcaaggttagg 5182182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 62 - 437
Target Start/End: Original strand, 5284269 - 5284644
Alignment:
Q  62 ttgttggtgacatccaagaccagatgatagatggaaatacatcgcgtgagaatccttcatagccacacagagaaatatatccaatgctttttgaccttac 161  Q
    |||||| ||||||||| ||| | || ||  ||||||| ||||||| ||| | ||| ||||| || |||| || |||||||||||||||||| ||||||||    
T  5284269 ttgttgctgacatccatgacaaaattattaatggaaacacatcgcttgaaagtccctcataaccgcacaaagcaatatatccaatgcttttcgaccttac 5284368  T
Q  162 tactaaaaagggaacttttgttattgcagtgttatttgcgatcagaatggttaaagatttcatttgttctaagtcctcttccaacttgtcaatctttaaa 261  Q
    |||| ||||||| ||| |||||||||| |||||||| || |||||| ||||||||||| |||| |||||||||||||||||||||||||||||| || ||    
T  5284369 tactgaaaagggcactcttgttattgcggtgttattagctatcagagtggttaaagatgtcatctgttctaagtcctcttccaacttgtcaatcattgaa 5284468  T
Q  262 caacccgaaagaatgagagtttttagagaattcaacttatagatgcttcttggcaggctacataggctaatacagtcttccaaattaatgagaagaattt 361  Q
    || ||  ||||||||| |||||||||||| ||||||||||||||||||| ||| |||||||||| |||||||||  |||| ||||| || | |  |||||    
T  5284469 cacccaaaaagaatgaaagtttttagagatttcaacttatagatgcttcgtgggaggctacataagctaatacaaccttcaaaatttatcaaagcaattt 5284568  T
Q  362 tcttgagatctccaatgctatgagaaatctcacacaaacttggacaatccacgagtactaacttttcaagattagg 437  Q
    | ||||||| |||||||||| | |||| |||| | |  |||||||||||   ||| |||| |||||||||||||||    
T  5284569 tattgagatttccaatgctaggtgaaacctcagatagccttggacaatctttgagcactagcttttcaagattagg 5284644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 100 - 437
Target Start/End: Complemental strand, 5350557 - 5350220
Alignment:
Q  100 acatcgcgtgagaatccttcatagccacacagagaaatatatccaatgctttttgaccttactactaaaaagggaacttttgttattgcagtgttatttg 199  Q
    ||||| ||||| |||||||||||||| |||| ||| || ||||||||||||||||||||||||||| ||||||| | | || |||||||||| |||| ||    
T  5350557 acatcacgtgaaaatccttcatagccgcacaaagagatgtatccaatgctttttgaccttactactgaaaagggtattctttttattgcagttttatgtg 5350458  T
Q  200 cgatcagaatggttaaagatttcatttgttctaagtcctcttccaacttgtcaatctttaaacaacccgaaagaatgagagtttttagagaattcaactt 299  Q
    | | |||| |||||||||||| ||||||||||| |||||||||||||||||||||| ||| ||| || ||||||||||||||||| ||||| ||||||||    
T  5350457 caagcagagtggttaaagattccatttgttctatgtcctcttccaacttgtcaatcattatacaccctgaaagaatgagagttttgagagatttcaactt 5350358  T
Q  300 atagatgcttcttggcaggctacataggctaatacagtcttccaaattaatgagaagaattttcttgagatctccaatgctatgagaaatctcacacaaa 399  Q
    | ||||||||||||| |||||    ||||||| ||| || |||||||  || ||||||||||   ||||||||||||||||| |||||| |||  ||||     
T  5350357 aaagatgcttcttggaaggctttgaaggctaacacaatcctccaaatctattagaagaatttcactgagatctccaatgctaggagaaacctcggacaac 5350258  T
Q  400 cttggacaatccacgagtactaacttttcaagattagg 437  Q
     ||||||||||   |||||||| |||||||||||||||    
T  5350257 attggacaatctttgagtactagcttttcaagattagg 5350220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 62 - 437
Target Start/End: Complemental strand, 5370772 - 5370397
Alignment:
Q  62 ttgttggtgacatccaagaccagatgatagatggaaatacatcgcgtgagaatccttcatagccacacagagaaatatatccaatgctttttgaccttac 161  Q
    |||||||||||||||||||||| |||||||||||||| |||||  |||| |||||| ||| ||||||||  ||||| ||||||||||||||||||| |||    
T  5370772 ttgttggtgacatccaagaccaaatgatagatggaaaaacatcatgtgaaaatcctacatggccacacaatgaaatgtatccaatgctttttgaccgtac 5370673  T
Q  162 tactaaaaagggaacttttgttattgcagtgttatttgcgatcagaatggttaaagatttcatttgttctaagtcctcttccaacttgtcaatctttaaa 261  Q
    |||| ||||||| ||  || ||||||||||||||||||| | |||| ||||||| |||| ||| |||||||  |||||||||||||| |||||| ||| |    
T  5370672 tactgaaaagggtaccctttttattgcagtgttatttgcaagcagagtggttaatgattccatctgttctatatcctcttccaacttctcaatcattaca 5370573  T
Q  262 caacccgaaagaatgagagtttttagagaattcaacttatagatgcttcttggcaggctacataggctaatacagtcttccaaattaatgagaagaattt 361  Q
    || || |||||||| ||||| |||||||| ||||||||||| ||||||||||| ||| |||  ||||||| ||| ||||| ||||  || ||||||||||    
T  5370572 caccctgaaagaataagagtctttagagatttcaacttataaatgcttcttggaaggttacgaaggctaacacaatcttcaaaatctattagaagaattt 5370473  T
Q  362 tcttgagatctccaatgctatgagaaatctcacacaaacttggacaatccacgagtactaacttttcaagattagg 437  Q
        |||||  ||||||||| |||||| |||| |||   ||| ||||||   |||||||||||||||||| |||||    
T  5370472 cgccgagattcccaatgctaggagaaacctcagacagcattgaacaatctttgagtactaacttttcaagcttagg 5370397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 15 - 183
Target Start/End: Original strand, 5243746 - 5243914
Alignment:
Q  15 cagagatgacattgcaggagatatttgaacttcgaatgaaagagaacttgttggtgacatccaagaccagatgatagatggaaatacatcgcgtgagaat 114  Q
    |||||||||||| ||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  5243746 cagagatgacatcgcaggagatgtttgaacttgggatgaaagagaacttgttggtgacatccaagaccagatgatagatggaaatacatcgcgtgaaaat 5243845  T
Q  115 ccttcatagccacacagagaaatatatccaatgctttttgaccttactactaaaaagggaacttttgtt 183  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||| ||| |||||    
T  5243846 ccttcatagccacacaaagaaatatatccgatgctttttgaccttactactgaaaagggcactcttgtt 5243914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 145 - 437
Target Start/End: Original strand, 5257297 - 5257589
Alignment:
Q  145 atgctttttgaccttactactaaaaagggaacttttgttattgcagtgttatttgcgatcagaatggttaaagatttcatttgttctaagtcctcttcca 244  Q
    ||||||||||| ||||  ||| | || || ||| |||||||||||||||||||||| || ||| ||||||||||| |||| |||||||||||||||||||    
T  5257297 atgctttttgatcttaaaactgataatggcactcttgttattgcagtgttatttgcaattagagtggttaaagatgtcatctgttctaagtcctcttcca 5257396  T
Q  245 acttgtcaatctttaaacaacccgaaagaatgagagtttttagagaattcaacttatagatgcttcttggcaggctacataggctaatacagtcttccaa 344  Q
    ||||||||||| || |||| || |||||||||| |||||||||||| ||||||||||||||||||||||| ||    |||| ||||||||| ||||||||    
T  5257397 acttgtcaatcattgaacacccagaaagaatgaaagtttttagagatttcaacttatagatgcttcttgggagttcgcataagctaatacaatcttccaa 5257496  T
Q  345 attaatgagaagaattttcttgagatctccaatgctatgagaaatctcacacaaacttggacaatccacgagtactaacttttcaagattagg 437  Q
    ||| || | || |||||||||||||| |||||||||   ||||| |  | | |   ||||||||||   ||||||||||||||||||||||||    
T  5257497 atttatcaaaacaattttcttgagatttccaatgcttgaagaaaccctagatagcattggacaatctttgagtactaacttttcaagattagg 5257589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 179 - 370
Target Start/End: Complemental strand, 5447241 - 5447050
Alignment:
Q  179 ttgttattgcagtgttatttgcgatcagaatggttaaagatttcatttgttctaagtcctcttccaacttgtcaatctttaaacaacccgaaagaatgag 278  Q
    ||||||||| |||||||||||| |  ||| |||||||||||| |||||  || ||||||||||||| ||||||||||||||||||||| ||||||| |||    
T  5447241 ttgttattgaagtgttatttgcaagaagagtggttaaagattccattttctcgaagtcctcttccaccttgtcaatctttaaacaaccagaaagaacgag 5447142  T
Q  279 agtttttagagaattcaacttatagatgcttcttggcaggctacataggctaatacagtcttccaaattaatgagaagaattttcttgagat 370  Q
    |||||| | ||| |||||||||||||||||| |||| ||||||||||||||||| ||||||||||| || || ||||||||||| |||||||    
T  5447141 agttttcaaagatttcaacttatagatgctttttgggaggctacataggctaatgcagtcttccaagtttatcagaagaattttattgagat 5447050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 73 - 283
Target Start/End: Complemental strand, 5179731 - 5179521
Alignment:
Q  73 atccaagaccagatgatagatggaaatacatcgcgtgagaatccttcatagccacacagagaaatatatccaatgctttttgaccttactactaaaaagg 172  Q
    ||||||||||  |||||| |||||| |||||| ||||||||||||| |||||| || | |||||||||||||||| ||||  ||||| |||||  |||||    
T  5179731 atccaagaccgaatgatatatggaactacatcacgtgagaatcctttatagccgcagaaagaaatatatccaatgtttttcaaccttcctactgcaaagg 5179632  T
Q  173 gaacttttgttattgcagtgttatttgcgatcagaatggttaaagatttcatttgttctaagtcctcttccaacttgtcaatctttaaacaacccgaaag 272  Q
    ||||| | ||||||||||||| ||| || |||||  | ||||| |||| ||||| ||| ||||||||||||||||||| ||||||| |||| || |||||    
T  5179631 gaactctagttattgcagtgtcattagcaatcagggtcgttaaggattccatttcttccaagtcctcttccaacttgttaatctttgaacacccagaaag 5179532  T
Q  273 aatgagagttt 283  Q
    ||| |||||||    
T  5179531 aatcagagttt 5179521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 73 - 283
Target Start/End: Complemental strand, 5281490 - 5281280
Alignment:
Q  73 atccaagaccagatgatagatggaaatacatcgcgtgagaatccttcatagccacacagagaaatatatccaatgctttttgaccttactactaaaaagg 172  Q
    ||||||||||  |||||| |||||| |||||| ||||||||||||| |||||| || | |||||||||||||||| ||||  ||||| |||||  |||||    
T  5281490 atccaagaccgaatgatatatggaactacatcacgtgagaatcctttatagccgcagaaagaaatatatccaatgtttttcaaccttcctactgcaaagg 5281391  T
Q  173 gaacttttgttattgcagtgttatttgcgatcagaatggttaaagatttcatttgttctaagtcctcttccaacttgtcaatctttaaacaacccgaaag 272  Q
    ||||| ||||||||||||||| ||| || |||||  | ||||| |||| ||||||||| ||||||||||| ||||||| |||| || |||| || |||||    
T  5281390 gaactcttgttattgcagtgtcattagcaatcagggtcgttaaggattccatttgttccaagtcctcttctaacttgttaatcattgaacacccagaaag 5281291  T
Q  273 aatgagagttt 283  Q
    ||| |||||||    
T  5281290 aatcagagttt 5281280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 62 - 377
Target Start/End: Complemental strand, 5397151 - 5396836
Alignment:
Q  62 ttgttggtgacatccaagaccagatgatagatggaaatacatcgcgtgagaatccttcatagccacacagagaaatatatccaatgctttttgaccttac 161  Q
    |||||||||||||||||||| | ||||||| |||||| || || | ||| ||||||||||| || |||| ||| ||| |||||||||||||| ||||||     
T  5397151 ttgttggtgacatccaagacgaaatgatagctggaaacacttcacatgaaaatccttcatatccgcacaaagagataaatccaatgctttttaaccttaa 5397052  T
Q  162 tactaaaaagggaacttttgttattgcagtgttatttgcgatcagaatggttaaagatttcatttgttctaagtcctcttccaacttgtcaatctttaaa 261  Q
     | | |||| || ||| || ||||||||||||||||||| | ||   |||||||||||| ||| ||||| || || |||||||| |||||||||  ||||    
T  5397051 aattgaaaacggcactctttttattgcagtgttatttgcaaccaaggtggttaaagattccatctgttccaaatcttcttccaatttgtcaatcagtaaa 5396952  T
Q  262 caacccgaaagaatgagagtttttagagaattcaacttatagatgcttcttggcaggctacataggctaatacagtcttccaaattaatgagaagaattt 361  Q
    || || |||||||  ||||||| ||| || ||||||||||| || |||||||| |||||    ||  ||||||| |  |||||||| || ||||| ||||    
T  5396951 cacccagaaagaagaagagtttgtagtgatttcaacttataaatacttcttggaaggctttgaagcttaatacaattctccaaatttattagaagtattt 5396852  T
Q  362 tcttgagatctccaat 377  Q
    | || |||||||||||    
T  5396851 ttttcagatctccaat 5396836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 225 - 434
Target Start/End: Original strand, 5243910 - 5244119
Alignment:
Q  225 ttgttctaagtcctcttccaacttgtcaatctttaaacaacccgaaagaatgagagtttttagagaattcaacttatagatgcttcttggcaggctacat 324  Q
    |||||| ||||||||||||||||| |||||| ||| ||| || || ||||||| |||||| ||||| ||||||||||||||||||||||| ||||| |      
T  5243910 ttgttccaagtcctcttccaacttctcaatcattatacaccctgagagaatgaaagttttcagagatttcaacttatagatgcttcttggaaggcttcga 5244009  T
Q  325 aggctaatacagtcttccaaattaatgagaagaattttcttgagatctccaatgctatgagaaatctcacacaaacttggacaatccacgagtactaact 424  Q
    ||||||| ||| ||||||||||  || ||||||||||   ||||||  ||||||||| ||||||||||  ||||   || ||||||   |||||||| ||    
T  5244010 aggctaacacaatcttccaaatctattagaagaatttcactgagattcccaatgctaggagaaatctcggacaacactgaacaatctttgagtactagct 5244109  T
Q  425 tttcaagatt 434  Q
    ||||||||||    
T  5244110 tttcaagatt 5244119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 292 - 437
Target Start/End: Original strand, 5147006 - 5147151
Alignment:
Q  292 ttcaacttatagatgcttcttggcaggctacataggctaatacagtcttccaaattaatgagaagaattttcttgagatctccaatgctatgagaaatct 391  Q
    |||||| |||| || |||||||| || || |  |||||| |||| ||||||||||| || ||||||||||| ||||||| |||||| ||||||||||  |    
T  5147006 ttcaacctatatatacttcttggaagacttcgaaggctagtacaatcttccaaatttatcagaagaattttattgagatatccaatactatgagaaactt 5147105  T
Q  392 cacacaaacttggacaatccacgagtactaacttttcaagattagg 437  Q
    || ||||  ||||||||||   ||||||||  | ||||||||||||    
T  5147106 cagacaacattggacaatcagagagtactagttgttcaagattagg 5147151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 62 - 437
Target Start/End: Complemental strand, 4344847 - 4344472
Alignment:
Q  62 ttgttggtgacatccaagaccagatgatagatggaaatacatcgcgtgagaatccttcatagccacacagagaaatatatccaatgctttttgaccttac 161  Q
    |||||||||||||||||||||| |||||||| ||||| ||||| ||||||||||||||||| ||||||| ||||||| ||||||||| ||||||||||||    
T  4344847 ttgttggtgacatccaagaccaaatgatagaaggaaacacatcacgtgagaatccttcatatccacacaaagaaataaatccaatgcgttttgaccttac 4344748  T
Q  162 tactaaaaagggaacttttgttattgcagtgttatttgcgatcagaatggttaaagatttcatttgttctaagtcctcttccaacttgtcaatctttaaa 261  Q
    |||| ||||||| ||||||||||| |||||||||||||| |||||| |||||||||||| ||||||||| |||||||||||||||||||||||| |||||    
T  4344747 tactgaaaagggtacttttgttatagcagtgttatttgcaatcagagtggttaaagattccatttgttccaagtcctcttccaacttgtcaatcattaaa 4344648  T
Q  262 caacccgaaagaatgagagtttttagagaattcaacttatagatgcttcttggcaggctacataggctaatacagtcttccaaattaatgagaagaattt 361  Q
    || || || |||||||||||||| ||||| |||||| |||||||| ||||||| ||| |||| ||||||||||| | || |||||| || | ||||||||    
T  4344647 catccagatagaatgagagttttcagagatttcaacgtatagatgtttcttggaaggttacaaaggctaatacaatttttcaaatttatcaaaagaattt 4344548  T
Q  362 tcttgagatctccaatgctatgagaaatctcacacaaacttggacaatccacgagtactaacttttcaagattagg 437  Q
    | ||||||| |||||| || || ||||||||| |||  |||||||||||   |||||||| |||||||||||||||    
T  4344547 tgttgagatgtccaatactttgggaaatctcagacagccttggacaatctttgagtactagcttttcaagattagg 4344472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 65 - 437
Target Start/End: Original strand, 4320502 - 4320874
Alignment:
Q  65 ttggtgacatccaagaccagatgatagatggaaatacatcgcgtgagaatccttcatagccacacagagaaatatatccaatgctttttgaccttactac 164  Q
    ||||||||||||||||||| |||||||| ||||| ||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||     
T  4320502 ttggtgacatccaagaccaaatgatagaaggaaacacatcacgtgagaatccttcatatccacacagagaaataaatccaatgctttttgaccttactaa 4320601  T
Q  165 taaaaagggaacttttgttattgcagtgttatttgcgatcagaatggttaaagatttcatttgttctaagtcctcttccaacttgtcaatctttaaacaa 264  Q
    | |||||||||||||||||||  |||| |||||||| |||||  |||||||||||| ||||||||| |||||||||||||||||||||||| |||||||     
T  4320602 tgaaaagggaacttttgttataccagtattatttgcaatcagggtggttaaagattccatttgttccaagtcctcttccaacttgtcaatcattaaacat 4320701  T
Q  265 cccgaaagaatgagagtttttagagaattcaacttatagatgcttcttggcaggctacataggctaatacagtcttccaaattaatgagaagaattttct 364  Q
    ||||| ||||||||||| || ||||  |||||| |||||||| ||||||| |||||||| ||||||||||| |||| |||||| || | || || ||| |    
T  4320702 cccgatagaatgagagtattcagagttttcaacgtatagatgtttcttggaaggctacaaaggctaatacaatctttcaaatttatcaaaacaacttttt 4320801  T
Q  365 tgagatctccaatgctatgagaaatctcacacaaacttggacaatccacgagtactaacttttcaagattagg 437  Q
    |||||| |||||||||||| |||| || | |||  ||||| |||||  |||| |||| |||||||||||||||    
T  4320802 tgagatgtccaatgctatgggaaacctgagacagccttgggcaatcttcgagcactagcttttcaagattagg 4320874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 62 - 437
Target Start/End: Complemental strand, 4361278 - 4360903
Alignment:
Q  62 ttgttggtgacatccaagaccagatgatagatggaaatacatcgcgtgagaatccttcatagccacacagagaaatatatccaatgctttttgaccttac 161  Q
    |||||||||||||||||||| | |||||||| ||||| ||||| ||||||||||||||||| ||||||| ||||||| ||||||||| |||||| |||||    
T  4361278 ttgttggtgacatccaagacgaaatgatagaaggaaacacatcacgtgagaatccttcatatccacacaaagaaataaatccaatgcgttttgatcttac 4361179  T
Q  162 tactaaaaagggaacttttgttattgcagtgttatttgcgatcagaatggttaaagatttcatttgttctaagtcctcttccaacttgtcaatctttaaa 261  Q
     | | ||||||| |||||||||||  ||||||||||||| |||||| |||||||||||| ||||||||| ||||||||||||||| |||||||| || ||    
T  4361178 aattgaaaagggtacttttgttataccagtgttatttgcaatcagagtggttaaagattccatttgttccaagtcctcttccaacgtgtcaatcattgaa 4361079  T
Q  262 caacccgaaagaatgagagtttttagagaattcaacttatagatgcttcttggcaggctacataggctaatacagtcttccaaattaatgagaagaattt 361  Q
    || || || |||||||||||||| ||||| |||||| |||||||| ||||||| ||| |||| |||||||| || |||| |||||| || | ||||||||    
T  4361078 catccagatagaatgagagttttcagagatttcaacgtatagatgtttcttggaaggttacaaaggctaatgcaatctttcaaatttatcaaaagaattt 4360979  T
Q  362 tcttgagatctccaatgctatgagaaatctcacacaaacttggacaatccacgagtactaacttttcaagattagg 437  Q
    ||||||||| |||||| || || ||||||||| |||  |||||||||||    ||||||| |||||||||||||||    
T  4360978 tcttgagatgtccaatactttgggaaatctcagacagccttggacaatctttaagtactagcttttcaagattagg 4360903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 62 - 437
Target Start/End: Original strand, 4123819 - 4124194
Alignment:
Q  62 ttgttggtgacatccaagaccagatgatagatggaaatacatcgcgtgagaatccttcatagccacacagagaaatatatccaatgctttttgaccttac 161  Q
    |||||||| ||||||||||| | |||||||| ||||| ||||| || |||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  4123819 ttgttggtaacatccaagacgaaatgatagaaggaaacacatcacgagagaatccttcatatccacacagagaaataaatccaatgctttttgaccttac 4123918  T
Q  162 tactaaaaagggaacttttgttattgcagtgttatttgcgatcagaatggttaaagatttcatttgttctaagtcctcttccaacttgtcaatctttaaa 261  Q
    |||  ||||||| ||||||||||| ||||| |||||||| |||||| |||||||||||| ||||||||| || ||||||||||||||||||||| |||||    
T  4123919 taccgaaaagggcacttttgttatagcagtattatttgcaatcagagtggttaaagattccatttgttccaactcctcttccaacttgtcaatcattaaa 4124018  T
Q  262 caacccgaaagaatgagagtttttagagaattcaacttatagatgcttcttggcaggctacataggctaatacagtcttccaaattaatgagaagaattt 361  Q
    || ||||| |||||||||||||| ||||| ||||||  ||| ||| ||||||| ||| || | |||||| |||| |||| |||||| || | ||||| ||    
T  4124019 catcccgatagaatgagagttttcagagatttcaacgaataaatgtttcttggaaggttagaaaggctagtacaatctttcaaatttatcaaaagaactt 4124118  T
Q  362 tcttgagatctccaatgctatgagaaatctcacacaaacttggacaatccacgagtactaacttttcaagattagg 437  Q
    |||| |||| ||||||  |||| || | |||| |||  |||||||||||   |||||| | ||||||||| |||||    
T  4124119 tcttaagatgtccaattgtatgggatacctcagacagccttggacaatctttgagtaccagcttttcaaggttagg 4124194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 62 - 437
Target Start/End: Complemental strand, 4335546 - 4335171
Alignment:
Q  62 ttgttggtgacatccaagaccagatgatagatggaaatacatcgcgtgagaatccttcatagccacacagagaaatatatccaatgctttttgaccttac 161  Q
    ||||||||  |||||||||||| || ||||| ||||| ||||| || |||||||||||||| ||||||| ||| ||||| ||||||||||||||| ||||    
T  4335546 ttgttggtaccatccaagaccaaattatagaaggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgactttac 4335447  T
Q  162 tactaaaaagggaacttttgttattgcagtgttatttgcgatcagaatggttaaagatttcatttgttctaagtcctcttccaacttgtcaatctttaaa 261  Q
    |||| ||||||| |||||||||||  ||||||||| ||| || ||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  4335446 tactgaaaagggcacttttgttataccagtgttatctgccatgagagtggttaaagattccatttgttccaagtcctcttccaacttgtcaatctttaaa 4335347  T
Q  262 caacccgaaagaatgagagtttttagagaattcaacttatagatgcttcttggcaggctacataggctaatacagtcttccaaattaatgagaagaattt 361  Q
    || || || |||||||||||||| ||||| |||||| |||||||| ||||||| ||| |||| |||||||| || |||| |||||| || | ||||| ||    
T  4335346 catcctgatagaatgagagttttcagagacttcaacgtatagatgtttcttggaaggttacaaaggctaatgcaatctttcaaatttatcaaaagaactt 4335247  T
Q  362 tcttgagatctccaatgctatgagaaatctcacacaaacttggacaatccacgagtactaacttttcaagattagg 437  Q
    |||| |||| ||||||  |||| || | |||| |||  || ||||||||   ||||||||  ||||||||||||||    
T  4335246 tcttaagatgtccaattgtatgggatacctcagacagcctcggacaatctttgagtactaggttttcaagattagg 4335171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 124 - 410
Target Start/End: Original strand, 4133367 - 4133651
Alignment:
Q  124 ccacacagagaaatatatccaatgctttttgaccttactactaaaaagggaacttttgttattgcagtgttatttgcgatcagaatggttaaagatttca 223  Q
    ||||| |||||||||||| ||||||||||||||||| | ||| ||||||| ||||||||||||||||||||||   | |||||| |||||||||| | ||    
T  4133367 ccacaaagagaaatatattcaatgctttttgaccttgcgactgaaaagggcacttttgttattgcagtgttatccacaatcagagtggttaaagactcca 4133466  T
Q  224 tttgttctaagtcctcttccaacttgtcaatctttaaacaacccgaaagaatgagagtttttagagaattcaacttatagatgcttcttggcaggctaca 323  Q
    ||||||| |||||  ||||||| ||||||||  ||||||| || |||||||| |||||||| ||||| ||||||  ||||||| ||||||| ||| |||     
T  4133467 tttgttccaagtc--cttccaatttgtcaataattaaacagccagaaagaataagagttttcagagatttcaacgaatagatggttcttggaaggttacg 4133564  T
Q  324 taggctaatacagtcttccaaattaatgagaagaattttcttgagatctccaatgctatgagaaatctcacacaaacttggacaatc 410  Q
     |||||| ||||||||| |||||| || |  |||| ||| | |||||  |||||| |||| |||| |||| |||  |||||||||||    
T  4133565 aaggctagtacagtctttcaaatttataatgagaactttatggagatgaccaatggtatgggaaacctcagacagccttggacaatc 4133651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 66 - 311
Target Start/End: Original strand, 6498410 - 6498655
Alignment:
Q  66 tggtgacatccaagaccagatgatagatggaaatacatcgcgtgagaatccttcatagccacacagagaaatatatccaatgctttttgaccttactact 165  Q
    |||||||||||||||||  |||| ||| ||||||||||| ||||| ||||||| | | ||||  | |||||| ||||||||||||||||| ||||||| |    
T  6498410 tggtgacatccaagaccgaatgagagaaggaaatacatcacgtgaaaatcctttaaatccacctaaagaaatgtatccaatgctttttgatcttactatt 6498509  T
Q  166 aaaaagggaacttttgttattgcagtgttatttgcgatcagaatggttaaagatttcatttgttctaagtcctcttccaacttgtcaatctttaaacaac 265  Q
     ||||||||||||||||||| ||||| ||||  || ||||   | || || |||| ||| ||||| | |||||| ||||| |||||||||||  |||| |    
T  6498510 gaaaagggaacttttgttatagcagtcttatccgcaatcaaggttgtcaatgattccatctgttccacgtcctcctccaatttgtcaatcttggaacatc 6498609  T
Q  266 ccgaaagaatgagagtttttagagaattcaacttatagatgcttct 311  Q
    | |||||||| | ||||| |||||| || || ||||||||||||||    
T  6498610 cagaaagaatcaaagtttctagagattttaatttatagatgcttct 6498655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 66 - 311
Target Start/End: Complemental strand, 6651264 - 6651019
Alignment:
Q  66 tggtgacatccaagaccagatgatagatggaaatacatcgcgtgagaatccttcatagccacacagagaaatatatccaatgctttttgaccttactact 165  Q
    |||||||||||||||||  | || | | ||||||||||| ||||| ||||||||| ||||||| |||||||||||||||||| || || | ||||||| |    
T  6651264 tggtgacatccaagaccgaacgagaaaaggaaatacatctcgtgaaaatccttcaaagccacatagagaaatatatccaatgtttcttaatcttactatt 6651165  T
Q  166 aaaaagggaacttttgttattgcagtgttatttgcgatcagaatggttaaagatttcatttgttctaagtcctcttccaacttgtcaatctttaaacaac 265  Q
     |||| || ||||||||||| ||||| ||||  || ||||   |  | || |||| ||| ||||| |||||||| ||||| |||||||||||  |||| |    
T  6651164 gaaaacggcacttttgttatagcagtcttatccgcaatcaaggttttcaatgattccatctgttccaagtcctcctccaatttgtcaatcttggaacatc 6651065  T
Q  266 ccgaaagaatgagagtttttagagaattcaacttatagatgcttct 311  Q
    | |||||||| | ||||| |||||| || || ||||| ||||||||    
T  6651064 cagaaagaatcaaagtttctagagattttaatttatatatgcttct 6651019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 94 - 314
Target Start/End: Original strand, 6621419 - 6621639
Alignment:
Q  94 ggaaatacatcgcgtgagaatccttcatagccacacagagaaatatatccaatgctttttgaccttactactaaaaagggaacttttgttattgcagtgt 193  Q
    ||||| ||||| ||||| ||||||||| | ||||| | |||||||||||||||| |||| || | ||||| | ||||||||||||||||||| ||||| |    
T  6621419 ggaaacacatcccgtgaaaatccttcaaatccacataaagaaatatatccaatgtttttagatcgtactattgaaaagggaacttttgttatagcagtct 6621518  T
Q  194 tatttgcgatcagaatggttaaagatttcatttgttctaagtcctcttccaacttgtcaatctttaaacaacccgaaagaatgagagtttttagagaatt 293  Q
    |||  || ||||   | || || |||| ||| ||||| |||||||| ||||| ||||||||| |  |||| || |||||||| | ||||| |||||| ||    
T  6621519 tatccgcaatcaaggttgtcaatgattccatctgttccaagtcctcctccaatttgtcaatcatggaacatcctgaaagaattaaagtttctagagattt 6621618  T
Q  294 caacttatagatgcttcttgg 314  Q
     || |||||||||||||||||    
T  6621619 taatttatagatgcttcttgg 6621639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 66 - 309
Target Start/End: Original strand, 6545332 - 6545575
Alignment:
Q  66 tggtgacatccaagaccagatgatagatggaaatacatcgcgtgagaatccttcatagccacacagagaaatatatccaatgctttttgaccttactact 165  Q
    |||||||| ||||||||  |||| ||| || |||||||| ||||| ||||||||| ||||||  | |||||||||||||||||||||  | || |||| |    
T  6545332 tggtgacagccaagaccgaatgagagaagggaatacatcacgtgaaaatccttcaaagccacgaaaagaaatatatccaatgcttttcaatctaactatt 6545431  T
Q  166 aaaaagggaacttttgttattgcagtgttatttgcgatcagaatggttaaagatttcatttgttctaagtcctcttccaacttgtcaatctttaaacaac 265  Q
     ||||||| ||||||||||| ||||| ||||  || ||||   |  | || |||| ||| ||||| |||||||| ||||| |||| ||||||  |||| |    
T  6545432 gaaaagggcacttttgttatagcagtcttatccgcaatcaaggttttcaacgattccatctgttccaagtcctcctccaatttgttaatcttggaacatc 6545531  T
Q  266 ccgaaagaatgagagtttttagagaattcaacttatagatgctt 309  Q
    |||||||||| | ||||| |||||| || || ||||||||||||    
T  6545532 ccgaaagaatcaaagtttctagagattttaatttatagatgctt 6545575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 113 - 314
Target Start/End: Original strand, 7885322 - 7885523
Alignment:
Q  113 atccttcatagccacacagagaaatatatccaatgctttttgaccttactactaaaaagggaacttttgttattgcagtgttatttgcgatcagaatggt 212  Q
    |||||| ||| ||||| ||||||||| || ||||||||||||| |||||||||  |||||| ||| |||| || ||||||| ||  || | ||   ||||    
T  7885322 atcctttataaccacatagagaaataaatgcaatgctttttgatcttactactgcaaagggcactcttgtgatagcagtgtcatccgcaaccaaggtggt 7885421  T
Q  213 taaagatttcatttgttctaagtcctcttccaacttgtcaatctttaaacaacccgaaagaatgagagtttttagagaattcaacttatagatgcttctt 312  Q
    ||||||||||||||||||||  |||||||| ||||||||||| |||  ||| || || |||||||| ||||| || || |  |||||||| ||||| |||    
T  7885422 taaagatttcatttgttctatatcctcttctaacttgtcaatttttgtacatccagacagaatgagtgttttcagcgagtctaacttatatatgctcctt 7885521  T
Q  313 gg 314  Q
    ||    
T  7885522 gg 7885523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 73 - 307
Target Start/End: Complemental strand, 6753150 - 6752916
Alignment:
Q  73 atccaagaccagatgatagatggaaatacatcgcgtgagaatccttcatagccacacagagaaatatatccaatgctttttgaccttactactaaaaagg 172  Q
    ||||||||||  |||| ||| || |||||||| ||||| ||||||||| ||||||  | |||||||||||||||||||||  | ||||||| | ||||||    
T  6753150 atccaagaccgaatgagagaagggaatacatcacgtgaaaatccttcaaagccacgaaaagaaatatatccaatgcttttcaatcttactattgaaaagg 6753051  T
Q  173 gaacttttgttattgcagtgttatttgcgatcagaatggttaaagatttcatttgttctaagtcctcttccaacttgtcaatctttaaacaacccgaaag 272  Q
    | ||||||||||| ||||| ||||  || ||||   |  | || |||| ||| ||||| |||||||| ||||| ||||||||| |  |||| || |||||    
T  6753050 gcacttttgttatagcagtcttatccgcaatcaaggtaatcaatgattccatctgttccaagtcctcctccaatttgtcaatcatggaacatccagaaag 6752951  T
Q  273 aatgagagtttttagagaattcaacttatagatgc 307  Q
    ||| | ||||| |||||| || || ||||| ||||    
T  6752950 aatcaaagtttctagagattttaatttatatatgc 6752916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 66 - 314
Target Start/End: Original strand, 6532116 - 6532364
Alignment:
Q  66 tggtgacatccaagaccagatgatagatggaaatacatcgcgtgagaatccttcatagccacacagagaaatatatccaatgctttttgaccttactact 165  Q
    |||||||||||||||||  |||||||| |||||||||||   ||| ||||||||| |||| || | |||||||||| ||||| ||||||  ||||||| |    
T  6532116 tggtgacatccaagaccgaatgatagaaggaaatacatcatttgaaaatccttcaaagccgcaaatagaaatatattcaatgttttttggtcttactatt 6532215  T
Q  166 aaaaagggaacttttgttattgcagtgttatttgcgatcagaatggttaaagatttcatttgttctaagtcctcttccaacttgtcaatctttaaacaac 265  Q
     ||||||| |||| || ||| ||||| ||||  || ||||   | || || |||| ||| ||||||| |||||| ||||| |||| ||||||  |||| |    
T  6532216 gaaaaggggacttctgctatagcagtcttatccgcaatcaaggttgtcaacgattccatctgttctatgtcctcctccaatttgttaatcttggaacatc 6532315  T
Q  266 ccgaaagaatgagagtttttagagaattcaacttatagatgcttcttgg 314  Q
    | |||||||| |  |||| |||||| || || ||||| || ||||||||    
T  6532316 ctgaaagaatcaaggtttctagagattttaatttataaatacttcttgg 6532364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 66 - 290
Target Start/End: Complemental strand, 6675900 - 6675676
Alignment:
Q  66 tggtgacatccaagaccagatgatagatggaaatacatcgcgtgagaatccttcatagccacacagagaaatatatccaatgctttttgaccttactact 165  Q
    ||||||||||||||||   |||| ||| |||||||||||  |||| ||||||||| ||||||| | ||| ||  |||||||||| ||||| ||||||| |    
T  6675900 tggtgacatccaagacttaatgagagaaggaaatacatcaagtgaaaatccttcaaagccacataaagagatgaatccaatgctctttgatcttactatt 6675801  T
Q  166 aaaaagggaacttttgttattgcagtgttatttgcgatcagaatggttaaagatttcatttgttctaagtcctcttccaacttgtcaatctttaaacaac 265  Q
     |||||||||||||| |||| || || |||| ||| ||||   | || |  |||| ||| ||||| | |||||| ||||| |||||||||||  |||| |    
T  6675800 gaaaagggaacttttattatagctgttttatctgcaatcaaggttgtcattgattccatctgttccacgtcctcctccaatttgtcaatcttggaacatc 6675701  T
Q  266 ccgaaagaatgagagtttttagaga 290  Q
    | |||||||| | ||||| ||||||    
T  6675700 cagaaagaatcaaagtttctagaga 6675676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 70 - 314
Target Start/End: Complemental strand, 6728599 - 6728355
Alignment:
Q  70 gacatccaagaccagatgatagatggaaatacatcgcgtgagaatccttcatagccacacagagaaatatatccaatgctttttgaccttactactaaaa 169  Q
    |||||||||||||| |  | ||| || |||||||| ||||| ||||||||| ||||||  | ||||||||||||||| |||||  | ||||||| | |||    
T  6728599 gacatccaagaccaaacaagagaagggaatacatcacgtgaaaatccttcaaagccacgaaaagaaatatatccaatacttttcaatcttactattgaaa 6728500  T
Q  170 agggaacttttgttattgcagtgttatttgcgatcagaatggttaaagatttcatttgttctaagtcctcttccaacttgtcaatctttaaacaacccga 269  Q
    | || ||||||||||| ||||| ||||  || ||||   | || || |||| ||| ||||| | |||||| ||||| ||||||||| |  |||| || ||    
T  6728499 atggcacttttgttatagcagtcttatccgcaatcaaggttgtcaatgattccatctgttccacgtcctcctccaatttgtcaatcatggaacatcctga 6728400  T
Q  270 aagaatgagagtttttagagaattcaacttatagatgcttcttgg 314  Q
    |||||| | ||||| |||||| || ||||| |||||| |||||||    
T  6728399 aagaatcaaagtttctagagattttaacttgtagatgtttcttgg 6728355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 70 - 196
Target Start/End: Original strand, 6588084 - 6588210
Alignment:
Q  70 gacatccaagaccagatgatagatggaaatacatcgcgtgagaatccttcatagccacacagagaaatatatccaatgctttttgaccttactactaaaa 169  Q
    |||||||||||||  |||| ||| || |||||||| ||||| ||||||||| ||||||| | |||||||||||||||||||||   |||||||| | |||    
T  6588084 gacatccaagaccgaatgagagaagggaatacatcacgtgaaaatccttcaaagccacaaaaagaaatatatccaatgcttttcatccttactattgaaa 6588183  T
Q  170 agggaacttttgttattgcagtgttat 196  Q
    | || |||||||| || ||||| ||||    
T  6588184 atggcacttttgtgatggcagtcttat 6588210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 66 - 314
Target Start/End: Complemental strand, 6815667 - 6815419
Alignment:
Q  66 tggtgacatccaagaccagatgatagatggaaatacatcgcgtgagaatccttcatagccacacagagaaatatatccaatgctttttgaccttactact 165  Q
    ||||||||||||||| |  | || ||| | ||||||||| ||||  ||||||||| ||||||  | |||||||||||||||||||||  | ||||| |||    
T  6815667 tggtgacatccaagagcgaacgagagaagaaaatacatcacgtgtaaatccttcaaagccacctaaagaaatatatccaatgcttttcaatcttaccact 6815568  T
Q  166 aaaaagggaacttttgttattgcagtgttatttgcgatcagaatggttaaagatttcatttgttctaagtcctcttccaacttgtcaatctttaaacaac 265  Q
     |||| || |||||| |||| ||||| ||||  || ||||   |  | ||||||| ||| ||||| |||||||| ||||| || |||||| |  |||| |    
T  6815567 gaaaatggcactttttttatagcagtcttatcagcaatcaaggtaatcaaagattccatctgttccaagtcctcctccaatttttcaatcatggaacatc 6815468  T
Q  266 ccgaaagaatgagagtttttagagaattcaacttatagatgcttcttgg 314  Q
    | |||||||| | ||||| |||||| || || |||||| ||||||||||    
T  6815467 cagaaagaatcaaagtttctagagattttaatttatagttgcttcttgg 6815419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 62 - 257
Target Start/End: Complemental strand, 6758925 - 6758730
Alignment:
Q  62 ttgttggtgacatccaagaccagatgatagatggaaatacatcgcgtgagaatccttcatagccacacagagaaatatatccaatgctttttgaccttac 161  Q
    ||||||||||||||| |||||  |||| | | ||||||| ||| ||||  ||||||||| ||||||||||||||||| ||| |||||||||| | ||||     
T  6758925 ttgttggtgacatcctagaccgaatgacaaaaggaaatatatcacgtgcaaatccttcaaagccacacagagaaataaatctaatgctttttaatcttaa 6758826  T
Q  162 tactaaaaagggaacttttgttattgcagtgttatttgcgatcagaatggttaaagatttcatttgttctaagtcctcttccaacttgtcaatctt 257  Q
    || | ||| ||| ||||  ||||||||||| ||||  || ||||   |  | || |||| ||| ||||| |||||||| ||||| |||||||||||    
T  6758825 tattgaaatgggtacttccgttattgcagtcttatccgcaatcaatgtaatcaatgattccatctgttccaagtcctcctccaatttgtcaatctt 6758730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 73 - 314
Target Start/End: Complemental strand, 6796977 - 6796736
Alignment:
Q  73 atccaagaccagatgatagatggaaatacatcgcgtgagaatccttcatagccacacagagaaatatatccaatgctttttgaccttactactaaaaagg 172  Q
    ||||||||||  |||| ||| || ||||| |||||||| ||||||||| ||||||| | |||||||||||||||  ||||  | ||||||| | |||| |    
T  6796977 atccaagaccgaatgagagaagggaatacgtcgcgtgaaaatccttcaaagccacaaaaagaaatatatccaatatttttcaatcttactattgaaaatg 6796878  T
Q  173 gaacttttgttattgcagtgttatttgcgatcagaatggttaaagatttcatttgttctaagtcctcttccaacttgtcaatctttaaacaacccgaaag 272  Q
    | |||||||| || | ||| |||| ||| |||| | |  | || |||| ||| ||||| |||||||| ||||| || |||||| |   ||| || |||||    
T  6796877 gcacttttgtgatagaagtcttatctgcaatcaaagtaatcaatgattccatctgttccaagtcctcctccaatttttcaatcatggtacatccagaaag 6796778  T
Q  273 aatgagagtttttagagaattcaacttatagatgcttcttgg 314  Q
    ||| | ||||| |||||| || ||  ||||||||||||||||    
T  6796777 aatcaaagtttctagagattttaatgtatagatgcttcttgg 6796736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 70 - 311
Target Start/End: Complemental strand, 6837467 - 6837226
Alignment:
Q  70 gacatccaagaccagatgatagatggaaatacatcgcgtgagaatccttcatagccacacagagaaatatatccaatgctttttgaccttactactaaaa 169  Q
    ||||||||||| |  |||| ||| || |||||||| ||||| ||||||||| |||| |  | |||||||||||||||| ||||    ||||||| | |||    
T  6837467 gacatccaagagcgaatgagagaagggaatacatcacgtgaaaatccttcaaagccgcttaaagaaatatatccaatgtttttcattcttactattgaaa 6837368  T
Q  170 agggaacttttgttattgcagtgttatttgcgatcagaatggttaaagatttcatttgttctaagtcctcttccaacttgtcaatctttaaacaacccga 269  Q
    | ||||||||| |||| ||||| |||| ||| ||||   |  | | ||||| ||| ||| | || ||||| ||||| ||||||||| |  |||| || ||    
T  6837367 atggaactttttttatagcagtcttatctgcaatcaaggtaataagagattccatctgtaccaaatcctcctccaatttgtcaatcatggaacatccaga 6837268  T
Q  270 aagaatgagagtttttagagaattcaacttatagatgcttct 311  Q
    |||||| | ||||| |||||| || ||  |||||||||||||    
T  6837267 aagaatcaaagtttgtagagattttaatgtatagatgcttct 6837226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 437
Target Start/End: Original strand, 6532384 - 6532487
Alignment:
Q  334 cagtcttccaaattaatgagaagaattttcttgagatctccaatgctatgagaaatctcacacaaacttggacaatccacgagtactaacttttcaagat 433  Q
    ||||||  |||||| || ||||||| ||| | ||||  |||||||||||| || | | || ||||||||||||| ||   ||||||||||||||||||||    
T  6532384 cagtctgtcaaatttatcagaagaagtttttggagagatccaatgctatgggagaccgcagacaaacttggacagtctttgagtactaacttttcaagat 6532483  T
Q  434 tagg 437  Q
    ||||    
T  6532484 tagg 6532487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 97 - 152
Target Start/End: Complemental strand, 6822857 - 6822802
Alignment:
Q  97 aatacatcgcgtgagaatccttcatagccacacagagaaatatatccaatgctttt 152  Q
    |||||||| ||||| ||||||||| |||| || | |||||||||||||||||||||    
T  6822857 aatacatcacgtgaaaatccttcaaagccgcataaagaaatatatccaatgctttt 6822802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 164; Significance: 2e-87; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 62 - 437
Target Start/End: Original strand, 8780 - 9155
Alignment:
Q  62 ttgttggtgacatccaagaccagatgatagatggaaatacatcgcgtgagaatccttcatagccacacagagaaatatatccaatgctttttgaccttac 161  Q
    ||||||| ||||||||||||   |||||||||||||| ||||| |||||||||||||||| ||| |||| |||||||||| |||| ||||||||||||||    
T  8780 ttgttggagacatccaagacttaatgatagatggaaacacatcacgtgagaatccttcatggccgcacaaagaaatatatacaatactttttgaccttac 8879  T
Q  162 tactaaaaagggaacttttgttattgcagtgttatttgcgatcagaatggttaaagatttcatttgttctaagtcctcttccaacttgtcaatctttaaa 261  Q
    || | ||||||| ||| |||||| ||||||||||| ||| | |||| |||||||||||| ||| ||||||| |||||||||||||||||||||| ||| |    
T  8880 tattgaaaagggcactcttgttaatgcagtgttatctgcaagcagagtggttaaagattccatctgttctatgtcctcttccaacttgtcaatcattata 8979  T
Q  262 caacccgaaagaatgagagtttttagagaattcaacttatagatgcttcttggcaggctacataggctaatacagtcttccaaattaatgagaagaattt 361  Q
    || || ||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||  ||||||| ||| ||||||||||  || ||||| ||||    
T  8980 cacccagaaagaatgagagttttcagagatttcaacttatagatgcttcttggaaggctacgaaggctaacacaatcttccaaatctattagaagtattt 9079  T
Q  362 tcttgagatctccaatgctatgagaaatctcacacaaacttggacaatccacgagtactaacttttcaagattagg 437  Q
        ||||||||||||| ||||||||| |||   |||  ||||||||||   |||||||| |||||||||||||||    
T  9080 caccgagatctccaatggtatgagaaacctcggtcaacattggacaatctttgagtactagcttttcaagattagg 9155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 164; Significance: 2e-87; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 62 - 437
Target Start/End: Complemental strand, 8877810 - 8877435
Alignment:
Q  62 ttgttggtgacatccaagaccagatgatagatggaaatacatcgcgtgagaatccttcatagccacacagagaaatatatccaatgctttttgaccttac 161  Q
    |||||||||||||||||||||| |||||||||||||| ||||| || || |||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  8877810 ttgttggtgacatccaagaccaaatgatagatggaaacacatcacgcgaaaatccttcatagccgcacaaagaaatatatccaatgctttttgaccttac 8877711  T
Q  162 tactaaaaagggaacttttgttattgcagtgttatttgcgatcagaatggttaaagatttcatttgttctaagtcctcttccaacttgtcaatctttaaa 261  Q
    || | |||| || ||| || ||||||||||||||||||| | |||| |||||||||||||||| |||||||||||||| ||||||||||||||| || ||    
T  8877710 taatgaaaatggtactctttttattgcagtgttatttgcaagcagagtggttaaagatttcatctgttctaagtcctcctccaacttgtcaatcattgaa 8877611  T
Q  262 caacccgaaagaatgagagtttttagagaattcaacttatagatgcttcttggcaggctacataggctaatacagtcttccaaattaatgagaagaattt 361  Q
    || || ||||||||||||| ||||||||| |||||||| || || |||||||| ||||| |  ||||||||||| ||||||||||| || | ||||| ||    
T  8877610 cacccagaaagaatgagagattttagagatttcaacttgtatatacttcttggaaggctccgaaggctaatacaatcttccaaatttatcaaaagaactt 8877511  T
Q  362 tcttgagatctccaatgctatgagaaatctcacacaaacttggacaatccacgagtactaacttttcaagattagg 437  Q
    | || |||  ||| ||  |||| ||||||||   ||| || ||||||||   |||||||| |||||||||||||||    
T  8877510 tattcagaagtcctatagtatgcgaaatctctatcaacctcggacaatctttgagtactagcttttcaagattagg 8877435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 64 - 155
Target Start/End: Complemental strand, 20838831 - 20838740
Alignment:
Q  64 gttggtgacatccaagaccagatgatagatggaaatacatcgcgtgagaatccttcatagccacacagagaaatatatccaatgctttttga 155  Q
    |||||||||||||||||||| |||| ||| ||||| |||||  |||| ||||||||||| ||||| || || ||||||||||||||||||||    
T  20838831 gttggtgacatccaagaccaaatgagagaaggaaaaacatcatgtgataatccttcatatccacatagtgatatatatccaatgctttttga 20838740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 64 - 152
Target Start/End: Original strand, 12599054 - 12599142
Alignment:
Q  64 gttggtgacatccaagaccagatgatagatggaaatacatcgcgtgagaatccttcatagccacacagagaaatatatccaatgctttt 152  Q
    ||||||||||||||||||||  ||| ||| ||||| ||||| ||||| ||||||||||| |||||||  || |||||||||||||||||    
T  12599054 gttggtgacatccaagaccaattgagagaaggaaaaacatcacgtgataatccttcatatccacacaaggatatatatccaatgctttt 12599142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 64 - 155
Target Start/End: Complemental strand, 20812476 - 20812385
Alignment:
Q  64 gttggtgacatccaagaccagatgatagatggaaatacatcgcgtgagaatccttcatagccacacagagaaatatatccaatgctttttga 155  Q
    |||||||||||||||||||| |||| ||| ||||| ||||| ||||| |||||||| || ||||| || || |||||| |||||||||||||    
T  20812476 gttggtgacatccaagaccaaatgagagaaggaaaaacatcacgtgataatccttcgtatccacatagtgatatatatgcaatgctttttga 20812385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 66 - 155
Target Start/End: Complemental strand, 15803108 - 15803019
Alignment:
Q  66 tggtgacatccaagaccagatgatagatggaaatacatcgcgtgagaatccttcatagccacacagagaaatatatccaatgctttttga 155  Q
    |||||| ||||||||||  |||| ||| ||||| |||||  |||| ||||||| ||| ||||| ||||| ||||||||||||||||||||    
T  15803108 tggtgatatccaagacctaatgagagaaggaaaaacatcatgtgataatcctttatatccacatagagatatatatccaatgctttttga 15803019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 284
Target Start/End: Complemental strand, 20812302 - 20812256
Alignment:
Q  238 tcttccaacttgtcaatctttaaacaacccgaaagaatgagagtttt 284  Q
    ||||||||||| ||||||||| ||||||| |||||||| ||||||||    
T  20812302 tcttccaacttctcaatctttgaacaaccagaaagaataagagtttt 20812256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 152
Target Start/End: Complemental strand, 30418021 - 30417931
Alignment:
Q  62 ttgttggtgacatccaagaccagatgatagatggaaatacatcgcgtgagaatccttcatagccacacagagaaatatatccaatgctttt 152  Q
    |||||||||||||||||||||  |||| | | ||||| ||||| ||||  ||||||||| | |||||||| || |||||  ||||||||||    
T  30418021 ttgttggtgacatccaagaccgtatgagacaaggaaaaacatcacgtgcaaatccttcaaatccacacagggatatataaacaatgctttt 30417931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 136; Significance: 9e-71; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 62 - 437
Target Start/End: Original strand, 36213709 - 36214084
Alignment:
Q  62 ttgttggtgacatccaagaccagatgatagatggaaatacatcgcgtgagaatccttcatagccacacagagaaatatatccaatgctttttgaccttac 161  Q
    |||||||||||||||||||||| |||||||||||||| |||||  ||||||||||||||||||| |||| ||| |||||  | |||||||| || |||||    
T  36213709 ttgttggtgacatccaagaccaaatgatagatggaaacacatcatgtgagaatccttcatagccgcacaaagatatataagcgatgcttttagatcttac 36213808  T
Q  162 tactaaaaagggaacttttgttattgcagtgttatttgcgatcagaatggttaaagatttcatttgttctaagtcctcttccaacttgtcaatctttaaa 261  Q
    |||| |||| || ||| |||||||||||||||||||||| ||||   |||||||||||| ||| ||||| | |||||||||||| |||||||||||| ||    
T  36213809 tactgaaaatggcactcttgttattgcagtgttatttgcaatcaaggtggttaaagattccatctgttccatgtcctcttccaatttgtcaatctttgaa 36213908  T
Q  262 caacccgaaagaatgagagtttttagagaattcaacttatagatgcttcttggcaggctacataggctaatacagtcttccaaattaatgagaagaattt 361  Q
    || || ||||||||||||||||| ||  | || ||||||||||| | | | || |||||    ||||||||||| ||||||||||| || ||||||| ||    
T  36213909 catccagaaagaatgagagttttaagtaattttaacttatagatacctttaggaaggctttgaaggctaatacaatcttccaaatttattagaagaactt 36214008  T
Q  362 tcttgagatctccaatgctatgagaaatctcacacaaacttggacaatccacgagtactaacttttcaagattagg 437  Q
    | ||||||| |||||| || || |||| |||| |||| |||||||||||   ||||||||  |||||||| |||||    
T  36214009 tattgagatgtccaatactgtgggaaacctcagacaatcttggacaatctgtgagtactagtttttcaaggttagg 36214084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 62 - 434
Target Start/End: Complemental strand, 18935587 - 18935215
Alignment:
Q  62 ttgttggtgacatccaagaccagatgatagatggaaatacatcgcgtgagaatccttcatagccacacagagaaatatatccaatgctttttgaccttac 161  Q
    ||||||| ||||||||||||   || || || ||||| ||||  ||||  ||||||||| | |||||||| |||||| |||||||||||||||| |||||    
T  18935587 ttgttggagacatccaagactgaataattgaaggaaacacattacgtgctaatccttcaaatccacacagtgaaataaatccaatgctttttgatcttac 18935488  T
Q  162 tactaaaaagggaacttttgttattgcagtgttatttgcgatcagaatggttaaagatttcatttgttctaagtcctcttccaacttgtcaatctttaaa 261  Q
    ||||  |||||| ||| ||||||  ||||| ||||  || | |||  |||| |||||| |||| ||||||| ||||||||||||||||||||| |||  |    
T  18935487 tactgcaaagggcactcttgttacagcagtcttatccgcaaccagggtggtcaaagatgtcatctgttctatgtcctcttccaacttgtcaatttttgta 18935388  T
Q  262 caacccgaaagaatgagagtttttagagaattcaacttatagatgcttcttggcaggctacataggctaatacagtcttccaaattaatgagaagaattt 361  Q
    || || || | |||||||| ||| |  || |  || ||||||||||||||||| ||   ||| ||||   ||||||||| |||||| || | ||||||||    
T  18935387 catccagataaaatgagagctttgaccgactctaatttatagatgcttcttggaagttcacaaaggcctgtacagtctttcaaatttattaaaagaattt 18935288  T
Q  362 tcttgagatctccaatgctatgagaaatctcacacaaacttggacaatccacgagtactaacttttcaagatt 434  Q
    ||||||||  ||| || |||||||||| |    |||||||||| |||||   ||||| |||||||||||||||    
T  18935287 tcttgagaagtcctatactatgagaaaccgaggacaaacttgggcaatctttgagtattaacttttcaagatt 18935215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 112 - 434
Target Start/End: Original strand, 34724516 - 34724838
Alignment:
Q  112 aatccttcatagccacacagagaaatatatccaatgctttttgaccttactactaaaaagggaacttttgttattgcagtgttatttgcgatcagaatgg 211  Q
    ||||||||| | ||||| || |||||| |||||||||||||||| |||||||||  ||| |||||  ||||||  | ||| ||||  || |  |||||||    
T  34724516 aatccttcaaatccacaaagtgaaataaatccaatgctttttgatcttactactgcaaatggaacccttgttacagaagtcttatccgcaactagaatgg 34724615  T
Q  212 ttaaagatttcatttgttctaagtcctcttccaacttgtcaatctttaaacaacccgaaagaatgagagtttttagagaattcaacttatagatgcttct 311  Q
    | |||||  |||||||||||| ||||||||||||||||||||| |||  ||| || || | ||||||||||||||  || ||||| ||||||||||||||    
T  34724616 tcaaagaagtcatttgttctatgtcctcttccaacttgtcaatttttgtacatccagacacaatgagagtttttactgacttcaatttatagatgcttct 34724715  T
Q  312 tggcaggctacataggctaatacagtcttccaaattaatgagaagaattttcttgagatctccaatgctatgagaaatctca-cacaaacttggacaatc 410  Q
    ||| ||   ||| ||||   ||||||||| |||||| || |  |||||||||||||||| ||| ||  || |||||| || |  ||||| ||||||||||    
T  34724716 tggaagctcacaaaggcctgtacagtctttcaaatttatcaatagaattttcttgagatttcctatattaggagaaa-ctgaggacaaatttggacaatc 34724814  T
Q  411 cacgagtactaacttttcaagatt 434  Q
       ||||| |||||||||||||||    
T  34724815 tttgagtattaacttttcaagatt 34724838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 123; Significance: 5e-63; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 62 - 437
Target Start/End: Original strand, 47986752 - 47987107
Alignment:
Q  62 ttgttggtgacatccaagaccagatgatagatggaaatacatcgcgtgagaatccttcatagccacacagagaaatatatccaatgctttttgaccttac 161  Q
    |||||||||||||||||||||| |||||||||||||| ||||| ||||| |||||||||||||| |||||                     |||||| ||    
T  47986752 ttgttggtgacatccaagaccaaatgatagatggaaacacatcacgtgaaaatccttcatagccgcacagg--------------------tgacctcac 47986831  T
Q  162 tactaaaaagggaacttttgttattgcagtgttatttgcgatcagaatggttaaagatttcatttgttctaagtcctcttccaacttgtcaatctttaaa 261  Q
    |||| | || || ||| ||||||| |||||||||||||| | || | | |||||||||||||||| ||| | ||||||||||||||||| ||||||||||    
T  47986832 tactgataaaggcactcttgttatcgcagtgttatttgcaaccaaagtagttaaagatttcatttattccatgtcctcttccaacttgttaatctttaaa 47986931  T
Q  262 caacccgaaagaatgagagtttttagagaattcaacttatagatgcttcttggcaggctacataggctaatacagtcttccaaattaatgagaagaattt 361  Q
    || || ||||||||||||||||||||||| || || || ||  |||||||||| |||||||||||||||||||||||||||||||| || ||||||||||    
T  47986932 cagccagaaagaatgagagtttttagagattttaatttgtatgtgcttcttgggaggctacataggctaatacagtcttccaaatttatcagaagaattt 47987031  T
Q  362 tcttgagatctccaatgctatgagaaatctcacacaaacttggacaatccacgagtactaacttttcaagattagg 437  Q
    | | ||||| |||||||||| ||||||||||| | ||  |||| |||||   |||||||| |||||| ||||||||    
T  47987032 tgtcgagatgtccaatgctaggagaaatctcagataacattgggcaatctttgagtactagcttttcgagattagg 47987107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 62 - 437
Target Start/End: Original strand, 47996039 - 47996394
Alignment:
Q  62 ttgttggtgacatccaagaccagatgatagatggaaatacatcgcgtgagaatccttcatagccacacagagaaatatatccaatgctttttgaccttac 161  Q
    |||||||||||||||||||||| |||||||||||||| ||||| ||||| |||||||||||||| |||||                     |||||| ||    
T  47996039 ttgttggtgacatccaagaccaaatgatagatggaaacacatcacgtgaaaatccttcatagccgcacagg--------------------tgacctcac 47996118  T
Q  162 tactaaaaagggaacttttgttattgcagtgttatttgcgatcagaatggttaaagatttcatttgttctaagtcctcttccaacttgtcaatctttaaa 261  Q
    |||| | || || ||| ||||||| |||||||||||||| | || | | |||||||||||||||| ||| | ||||||||||||||||| ||||||||||    
T  47996119 tactgataaaggcactcttgttatcgcagtgttatttgcaaccaaagtagttaaagatttcatttattccatgtcctcttccaacttgttaatctttaaa 47996218  T
Q  262 caacccgaaagaatgagagtttttagagaattcaacttatagatgcttcttggcaggctacataggctaatacagtcttccaaattaatgagaagaattt 361  Q
    || || ||||||||||||||||||||||| || || || ||  |||||||||| |||||||||||||||||||||||||||||||| || ||||||||||    
T  47996219 cagccagaaagaatgagagtttttagagattttaatttgtatgtgcttcttgggaggctacataggctaatacagtcttccaaatttatcagaagaattt 47996318  T
Q  362 tcttgagatctccaatgctatgagaaatctcacacaaacttggacaatccacgagtactaacttttcaagattagg 437  Q
    | | ||||| |||||||||| ||||||||||| | ||  |||| |||||   |||||||| |||||| ||||||||    
T  47996319 tgtcgagatgtccaatgctaggagaaatctcagataacattgggcaatctttgagtactagcttttcgagattagg 47996394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 62 - 437
Target Start/End: Original strand, 48005326 - 48005681
Alignment:
Q  62 ttgttggtgacatccaagaccagatgatagatggaaatacatcgcgtgagaatccttcatagccacacagagaaatatatccaatgctttttgaccttac 161  Q
    |||||||||||||||||||||| |||||||||||||| ||||| ||||| |||||||||||||| |||||                     |||||| ||    
T  48005326 ttgttggtgacatccaagaccaaatgatagatggaaacacatcacgtgaaaatccttcatagccgcacagg--------------------tgacctcac 48005405  T
Q  162 tactaaaaagggaacttttgttattgcagtgttatttgcgatcagaatggttaaagatttcatttgttctaagtcctcttccaacttgtcaatctttaaa 261  Q
    |||| | || || ||| ||||||| |||||||||||||| | || | | |||||||||||||||| ||| | ||||||||||||||||| ||||||||||    
T  48005406 tactgataaaggcactcttgttatcgcagtgttatttgcaaccaaagtagttaaagatttcatttattccatgtcctcttccaacttgttaatctttaaa 48005505  T
Q  262 caacccgaaagaatgagagtttttagagaattcaacttatagatgcttcttggcaggctacataggctaatacagtcttccaaattaatgagaagaattt 361  Q
    || || ||||||||||||||||||||||| || || || ||  |||||||||| |||||||||||||||||||||||||||||||| || ||||||||||    
T  48005506 cagccagaaagaatgagagtttttagagattttaatttgtatgtgcttcttgggaggctacataggctaatacagtcttccaaatttatcagaagaattt 48005605  T
Q  362 tcttgagatctccaatgctatgagaaatctcacacaaacttggacaatccacgagtactaacttttcaagattagg 437  Q
    | | ||||| |||||||||| ||||||||||| | ||  |||| |||||   |||||||| |||||| ||||||||    
T  48005606 tgtcgagatgtccaatgctaggagaaatctcagataacattgggcaatctttgagtactagcttttcgagattagg 48005681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 62 - 437
Target Start/End: Original strand, 48014611 - 48014966
Alignment:
Q  62 ttgttggtgacatccaagaccagatgatagatggaaatacatcgcgtgagaatccttcatagccacacagagaaatatatccaatgctttttgaccttac 161  Q
    |||||||||||||||||||||| |||||||||||||| ||||| ||||| |||||||||||||| |||||                     |||||| ||    
T  48014611 ttgttggtgacatccaagaccaaatgatagatggaaacacatcacgtgaaaatccttcatagccgcacagg--------------------tgacctcac 48014690  T
Q  162 tactaaaaagggaacttttgttattgcagtgttatttgcgatcagaatggttaaagatttcatttgttctaagtcctcttccaacttgtcaatctttaaa 261  Q
    |||| | || || ||| ||||||| |||||||||||||| | || | | |||||||||||||||| ||| | ||||||||||||||||| ||||||||||    
T  48014691 tactgataaaggcactcttgttatcgcagtgttatttgcaaccaaagtagttaaagatttcatttattccatgtcctcttccaacttgttaatctttaaa 48014790  T
Q  262 caacccgaaagaatgagagtttttagagaattcaacttatagatgcttcttggcaggctacataggctaatacagtcttccaaattaatgagaagaattt 361  Q
    || || ||||||||||||||||||||||| || || || ||  |||||||||| |||||||||||||||||||||||||||||||| || ||||||||||    
T  48014791 cagccagaaagaatgagagtttttagagattttaatttgtatgtgcttcttgggaggctacataggctaatacagtcttccaaatttatcagaagaattt 48014890  T
Q  362 tcttgagatctccaatgctatgagaaatctcacacaaacttggacaatccacgagtactaacttttcaagattagg 437  Q
    | | ||||| |||||||||| ||||||||||| | ||  |||| |||||   |||||||| |||||| ||||||||    
T  48014891 tgtcgagatgtccaatgctaggagaaatctcagataacattgggcaatctttgagtactagcttttcgagattagg 48014966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 62 - 163
Target Start/End: Original strand, 32411083 - 32411184
Alignment:
Q  62 ttgttggtgacatccaagaccagatgatagatggaaatacatcgcgtgagaatccttcatagccacacagagaaatatatccaatgctttttgaccttac 161  Q
    |||||||||||||| ||||||| |||| ||| |||||||| ||  |||| ||||||||||| ||||| ||||| |||||| | |||||||| || |||||    
T  32411083 ttgttggtgacatctaagaccaaatgagagagggaaatacttcatgtgataatccttcatatccacatagagatatatatgcgatgcttttcgatcttac 32411182  T
Q  162 ta 163  Q
    ||    
T  32411183 ta 32411184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 62 - 155
Target Start/End: Original strand, 6905806 - 6905899
Alignment:
Q  62 ttgttggtgacatccaagaccagatgatagatggaaatacatcgcgtgagaatccttcatagccacacagagaaatatatccaatgctttttga 155  Q
    |||||||||||||||||||||| |||| ||| ||||| | ||| ||||| ||||||||||| || || || || |||||  |||||||||||||    
T  6905806 ttgttggtgacatccaagaccaaatgagagaaggaaaaatatcacgtgataatccttcatatccgcatagggatatatacacaatgctttttga 6905899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 115; Significance: 3e-58; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 60 - 358
Target Start/End: Original strand, 22584092 - 22584390
Alignment:
Q  60 acttgttggtgacatccaagaccagatgatagatggaaatacatcgcgtgagaatccttcatagccacacagagaaatatatccaatgctttttgacctt 159  Q
    |||||||| ||||||||||||||| || |||||||||| |||||||| | ||| ||||||||||||||||| |||||| || | |||  ||||||||||     
T  22584092 acttgttgatgacatccaagaccaaatcatagatggaactacatcgcttaagagtccttcatagccacacaaagaaatgtaccaaatagtttttgaccta 22584191  T
Q  160 actactaaaaagggaacttttgttattgcagtgttatttgcgatcagaatggttaaagatttcatttgttctaagtcctcttccaacttgtcaatcttta 259  Q
    | || | |||| || |||||| |||||||||| | |||||| | |||| |||||||||||| ||||||||| ||||||||||||||||| | ||  |||     
T  22584192 aatattgaaaatggcactttttttattgcagtttcatttgcaagcagagtggttaaagattccatttgttccaagtcctcttccaacttataaagttttt 22584291  T
Q  260 aacaacccgaaagaatgagagtttttagagaattcaacttatagatgcttcttggcaggctacataggctaatacagtcttccaaattaatgagaagaa 358  Q
    |||| || ||||||||||||||||| | ||| |||||||| |||||| ||||||| |||||||| ||||| | |||||||| |||||| || |||||||    
T  22584292 aacagccagaaagaatgagagttttcaaagatttcaacttgtagatgtttcttgggaggctacaaaggcttaaacagtcttgcaaatttattagaagaa 22584390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0813 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0813
Description:

Target: scaffold0813; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 66 - 311
Target Start/End: Original strand, 4710 - 4955
Alignment:
Q  66 tggtgacatccaagaccagatgatagatggaaatacatcgcgtgagaatccttcatagccacacagagaaatatatccaatgctttttgaccttactact 165  Q
    |||||||||||||||||  | || | | ||||||||||| ||||| ||||||||| ||||||| |||||||||||||||||| || || | ||||||| |    
T  4710 tggtgacatccaagaccgaacgagaaaaggaaatacatctcgtgaaaatccttcaaagccacatagagaaatatatccaatgtttcttaatcttactatt 4809  T
Q  166 aaaaagggaacttttgttattgcagtgttatttgcgatcagaatggttaaagatttcatttgttctaagtcctcttccaacttgtcaatctttaaacaac 265  Q
     |||| || ||||||||||| ||||| ||||  || ||||   |  | || |||| ||| ||||| |||||||| ||||| |||||||||||  |||| |    
T  4810 gaaaacggcacttttgttatagcagtcttatccgcaatcaaggttttcaatgattccatctgttccaagtcctcctccaatttgtcaatcttggaacatc 4909  T
Q  266 ccgaaagaatgagagtttttagagaattcaacttatagatgcttct 311  Q
    | |||||||| | ||||| |||||| || || ||||| ||||||||    
T  4910 cagaaagaatcaaagtttctagagattttaatttatatatgcttct 4955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 63 - 281
Target Start/End: Original strand, 3286516 - 3286734
Alignment:
Q  63 tgttggtgacatccaagaccagatgatagatggaaatacatcgcgtgagaatccttcatagccacacagagaaatatatccaatgctttttgaccttact 162  Q
    ||||||||||||||||||||  |||| |||| |||| |||||  |||| ||||||||||| ||||| || || |||||||  ||||||||||| |||||     
T  3286516 tgttggtgacatccaagacctaatgagagattgaaaaacatcatgtgataatccttcatatccacatagggatatatatctgatgctttttgatcttaca 3286615  T
Q  163 actaaaaagggaacttttgttattgcagtgttatttgcgatcagaatggttaaagatttcatttgttctaagtcctcttccaacttgtcaatctttaaac 262  Q
    | | ||||||| |||| | | |  || || |||||||| |||||  | || || |||| ||| ||  ||| ||| ||||||||||||||||||||| |||    
T  3286616 attgaaaagggcacttctttaacagctgtattatttgcaatcagtgttgtcaaggattccatctgcactatgtcttcttccaacttgtcaatctttgaac 3286715  T
Q  263 aacccgaaagaatgagagt 281  Q
    |||| ||||| ||||||||    
T  3286716 aaccagaaaggatgagagt 3286734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 64 - 163
Target Start/End: Original strand, 3262629 - 3262727
Alignment:
Q  64 gttggtgacatccaagaccagatgatagatggaaatacatcgcgtgagaatccttcatagccacacagagaaatatatccaatgctttttgaccttacta 163  Q
    |||||||||||||||||||| |||||||| ||||| ||||| ||||| ||||| ||||| ||||| || || |||||||||||||||||||| |||||||    
T  3262629 gttggtgacatccaagaccaaatgatagagggaaaaacatcacgtgaaaatcc-tcatatccacatagggatatatatccaatgctttttgatcttacta 3262727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 65 - 153
Target Start/End: Original strand, 3325003 - 3325091
Alignment:
Q  65 ttggtgacatccaagaccagatgatagatggaaatacatcgcgtgagaatccttcatagccacacagagaaatatatccaatgcttttt 153  Q
    ||||||||||||||||||| |||||||| ||||| |||||| |||| | ||||||||| ||||| || || ||||||||||||||||||    
T  3325003 ttggtgacatccaagaccaaatgatagaaggaaaaacatcgtgtgatagtccttcatatccacagagggatatatatccaatgcttttt 3325091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 62 - 155
Target Start/End: Original strand, 3391536 - 3391629
Alignment:
Q  62 ttgttggtgacatccaagaccagatgatagatggaaatacatcgcgtgagaatccttcatagccacacagagaaatatatccaatgctttttga 155  Q
    |||||||||||||||||||||  |||| ||| ||||| ||||   |||| ||||||||||| ||||| ||||| ||||||||||||||||||||    
T  3391536 ttgttggtgacatccaagacctaatgagagaaggaaaaacatgatgtgataatccttcatatccacatagagatatatatccaatgctttttga 3391629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 64 - 284
Target Start/End: Original strand, 7164654 - 7164874
Alignment:
Q  64 gttggtgacatccaagaccagatgatagatggaaatacatcgcgtgagaatccttcatagccacacagagaaatatatccaatgctttttgaccttacta 163  Q
    |||||||||||||||||||| || | ||| ||||| ||||| |  || || |||||||| | ||| || || |  ||||||||||||||||| |||||||    
T  7164654 gttggtgacatccaagaccaaataagagaaggaaaaacatcacaggataacccttcatatctacatagggataagtatccaatgctttttgatcttacta 7164753  T
Q  164 ctaaaaagggaacttttgttattgcagtgttatttgcgatcagaatggttaaagatttcatttgttctaagtcctcttccaacttgtcaatctttaaaca 263  Q
     |||| |||| |||| | |||  || || | ||||||||||||  | || || |||||||| ||   || ||| |||||||||| | |||||||| ||||    
T  7164754 ataaacagggcacttcttttacagctgtatcatttgcgatcagtgttgtcaaggatttcatctgcattatgtcttcttccaactaggcaatctttgaaca 7164853  T
Q  264 acccgaaagaatgagagtttt 284  Q
    ||| ||||| |||||||||||    
T  7164854 accagaaaggatgagagtttt 7164874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 64 - 155
Target Start/End: Complemental strand, 31176046 - 31175955
Alignment:
Q  64 gttggtgacatccaagaccagatgatagatggaaatacatcgcgtgagaatccttcatagccacacagagaaatatatccaatgctttttga 155  Q
    |||||||||||||||||||| |||| ||| ||||| || || | ||| ||||||||||| ||||| ||||| |||||| |||||||||||||    
T  31176046 gttggtgacatccaagaccaaatgagagaaggaaaaacgtcacatgataatccttcatatccacatagagatatatatgcaatgctttttga 31175955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 65 - 155
Target Start/End: Complemental strand, 3315056 - 3314966
Alignment:
Q  65 ttggtgacatccaagaccagatgatagatggaaatacatcgcgtgagaatccttcatagccacacagagaaatatatccaatgctttttga 155  Q
    ||||||||||||||||||| |||||||| ||||| ||||| ||||| || ||||||||  |||| || || |||||||||||| |||||||    
T  3315056 ttggtgacatccaagaccaaatgatagaaggaaaaacatcacgtgataaaccttcatattcacatagggatatatatccaatgttttttga 3314966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 62 - 155
Target Start/End: Complemental strand, 3364370 - 3364277
Alignment:
Q  62 ttgttggtgacatccaagaccagatgatagatggaaatacatcgcgtgagaatccttcatagccacacagagaaatatatccaatgctttttga 155  Q
    |||||||||| ||||||||||  |||| ||| ||||| ||||   |||| ||||||||||| ||||| ||||| ||||||||||||||||||||    
T  3364370 ttgttggtgatatccaagacctaatgagagaaggaaaaacatgatgtgataatccttcatatccacatagagatatatatccaatgctttttga 3364277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 62 - 139
Target Start/End: Original strand, 3407323 - 3407400
Alignment:
Q  62 ttgttggtgacatccaagaccagatgatagatggaaatacatcgcgtgagaatccttcatagccacacagagaaatat 139  Q
    |||||||||||||||||||||| |||||||| ||||| ||||| ||||| ||||||| ||| ||||| ||||| ||||    
T  3407323 ttgttggtgacatccaagaccaaatgatagaaggaaaaacatcacgtgataatccttgatatccacatagagatatat 3407400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 155
Target Start/End: Original strand, 3398522 - 3398613
Alignment:
Q  64 gttggtgacatccaagaccagatgatagatggaaatacatcgcgtgagaatccttcatagccacacagagaaatatatccaatgctttttga 155  Q
    |||||||||||||| ||||| |||| ||| ||||| |||||    || ||||||| ||| ||||| ||||| |||||| |||||||||||||    
T  3398522 gttggtgacatccatgaccaaatgagagaaggaaaaacatcagacgataatcctttatatccacatagagatatatatgcaatgctttttga 3398613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 152
Target Start/End: Original strand, 3267198 - 3267288
Alignment:
Q  62 ttgttggtgacatccaagaccagatgatagatggaaatacatcgcgtgagaatccttcatagccacacagagaaatatatccaatgctttt 152  Q
    ||||||||||||||||||||   || |||||  |||| |||||   ||| ||||||||||| ||||| ||||| |||||||| ||||||||    
T  3267198 ttgttggtgacatccaagactgaataatagaatgaaaaacatcttctgataatccttcatatccacatagagatatatatccgatgctttt 3267288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 284
Target Start/End: Original strand, 3398696 - 3398742
Alignment:
Q  238 tcttccaacttgtcaatctttaaacaacccgaaagaatgagagtttt 284  Q
    |||||||| |||||||||||| ||||||| |||| ||||||||||||    
T  3398696 tcttccaatttgtcaatctttgaacaaccagaaataatgagagtttt 3398742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 283
Target Start/End: Complemental strand, 3364194 - 3364149
Alignment:
Q  238 tcttccaacttgtcaatctttaaacaacccgaaagaatgagagttt 283  Q
    |||||||| |||||||||||| ||||||| ||||| ||||||||||    
T  3364194 tcttccaatttgtcaatctttgaacaaccagaaaggatgagagttt 3364149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 283
Target Start/End: Original strand, 3391712 - 3391757
Alignment:
Q  238 tcttccaacttgtcaatctttaaacaacccgaaagaatgagagttt 283  Q
    |||||||| |||||||||||| ||||||| ||||| ||||||||||    
T  3391712 tcttccaatttgtcaatctttgaacaaccagaaaggatgagagttt 3391757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 94 - 311
Target Start/End: Complemental strand, 6828 - 6611
Alignment:
Q  94 ggaaatacatcgcgtgagaatccttcatagccacacagagaaatatatccaatgctttttgaccttactactaaaaagggaacttttgttattgcagtgt 193  Q
    ||||| ||||| ||||| ||||||||| | ||||| | |||||||||||||||| |||| || | ||||| | ||||||||||||||||||| ||||| |    
T  6828 ggaaacacatcccgtgaaaatccttcaaatccacataaagaaatatatccaatgtttttagatcgtactattgaaaagggaacttttgttatagcagtct 6729  T
Q  194 tatttgcgatcagaatggttaaagatttcatttgttctaagtcctcttccaacttgtcaatctttaaacaacccgaaagaatgagagtttttagagaatt 293  Q
    |||  || ||||   |  | || |||| ||| ||||| |||||||| ||||| |||||||||||  |||| || |||||||| | ||||| |||||| ||    
T  6728 tatccgcaatcaaggttttcaatgattccatctgttccaagtcctcctccaatttgtcaatcttggaacatccagaaagaatcaaagtttctagagattt 6629  T
Q  294 caacttatagatgcttct 311  Q
     || ||||| ||||||||    
T  6628 taatttatatatgcttct 6611  T

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Target: scaffold0468 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 62 - 155
Target Start/End: Original strand, 6146 - 6239
Alignment:
Q  62 ttgttggtgacatccaagaccagatgatagatggaaatacatcgcgtgagaatccttcatagccacacagagaaatatatccaatgctttttga 155  Q
    |||||||||||||||||||||| || |  || ||||| ||||| ||||| ||||||||||| || || || || |||||  |||||||||||||    
T  6146 ttgttggtgacatccaagaccaaataagggaaggaaaaacatcacgtgataatccttcatatccgcatagggatatatacacaatgctttttga 6239  T

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Target: scaffold0373 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 70 - 311
Target Start/End: Complemental strand, 9883 - 9642
Alignment:
Q  70 gacatccaagaccagatgatagatggaaatacatcgcgtgagaatccttcatagccacacagagaaatatatccaatgctttttgaccttactactaaaa 169  Q
    ||||||||||| |  |||| ||| || |||||||| ||||| ||||||||| |||| |  | |||||||||||||||| ||||    ||||||| | |||    
T  9883 gacatccaagagcgaatgagagaagggaatacatcacgtgaaaatccttcaaagccgcttaaagaaatatatccaatgtttttcattcttactattgaaa 9784  T
Q  170 agggaacttttgttattgcagtgttatttgcgatcagaatggttaaagatttcatttgttctaagtcctcttccaacttgtcaatctttaaacaacccga 269  Q
    | ||||||||| |||| ||||| |||| ||| ||||   |  | | ||||| ||| ||| | || ||||| ||||| ||||||||| |  |||| || ||    
T  9783 atggaactttttttatagcagtcttatctgcaatcaaggtaataagagattccatctgtaccaaatcctcctccaatttgtcaatcatggaacatccaga 9684  T
Q  270 aagaatgagagtttttagagaattcaacttatagatgcttct 311  Q
    |||||| | ||||| |||||| || ||  |||||||||||||    
T  9683 aagaatcaaagtttgtagagattttaatgtatagatgcttct 9642  T

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