View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9667_low_11 (Length: 456)

Name: NF9667_low_11
Description: NF9667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9667_low_11
NF9667_low_11
[»] chr6 (1 HSPs)
chr6 (58-445)||(23507586-23507973)
[»] chr2 (5 HSPs)
chr2 (364-416)||(16942455-16942507)
chr2 (364-416)||(17013120-17013172)
chr2 (364-407)||(15120016-15120059)
chr2 (370-416)||(36643665-36643711)
chr2 (351-407)||(28572531-28572587)
[»] chr4 (1 HSPs)
chr4 (375-418)||(50247989-50248032)
[»] chr3 (2 HSPs)
chr3 (351-416)||(34285420-34285485)
chr3 (387-416)||(46895919-46895948)
[»] scaffold0370 (1 HSPs)
scaffold0370 (370-412)||(474-516)


Alignment Details
Target: chr6 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 58 - 445
Target Start/End: Original strand, 23507586 - 23507973
Alignment:
Q  58 tatgcgtgcttgaagagggacactaccatgctcaaaaagagaaatgatgttatcaaaatatagtatcttctaagacactaaatgatgttttattcctcga 157  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23507586 tatgcgtgcttgaagagggacactaccatgctcaaaaagagtaatgatgttatcaaaatatagtatcttctaagacactaaatgatgttttattcctcga 23507685  T
Q  158 cataggctaaataaggtaatcaaagcatttcatgggaacatgctatatatagctcttttctgttttgattcaaaaaaggtctttactcctttaataattt 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23507686 cataggctaaataaggtaatcaaagcatttcatgggaacatgctatatatagctcttttctgttttgattcaaaaaaggtctttactcctttaataattt 23507785  T
Q  258 ttgtactatgttgagnnnnnnnctaagcaatgtattgttttataaaattcatgtaccgacaaatacaaaatcttacatgatnnnnnnngaaaagaaatga 357  Q
    ||||||||| |||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||    
T  23507786 ttgtactatattgagaaaaaaactaagcaatgtattgttttataaaattcatgtaccgacaaatacaaaatcttacatgataaaaaaagaaaagaaatga 23507885  T
Q  358 taatgggtgccctaagggtactctttcacaaccttaaatagtaagtttttataaaaattaagagcaaatagtcactttagtctctgct 445  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23507886 taatgggtgccctaagggtactctttcacaaccttaaatagtaagtttttataaaaattaagagcaaatagtcactttagtctctgct 23507973  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 364 - 416
Target Start/End: Complemental strand, 16942507 - 16942455
Alignment:
Q  364 gtgccctaagggtactctttcacaaccttaaatagtaagtttttataaaaatt 416  Q
    |||||||||||| ||||||| |||||||||||||| |||||||||||||||||    
T  16942507 gtgccctaagggcactctttaacaaccttaaatagcaagtttttataaaaatt 16942455  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 364 - 416
Target Start/End: Complemental strand, 17013172 - 17013120
Alignment:
Q  364 gtgccctaagggtactctttcacaaccttaaatagtaagtttttataaaaatt 416  Q
    |||||||||||| ||||||| |||||||||||||| |||||||||||||||||    
T  17013172 gtgccctaagggcactctttaacaaccttaaatagcaagtttttataaaaatt 17013120  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 407
Target Start/End: Original strand, 15120016 - 15120059
Alignment:
Q  364 gtgccctaagggtactctttcacaaccttaaatagtaagttttt 407  Q
    |||||||||||| ||||||| |||||||||||||||||| ||||    
T  15120016 gtgccctaagggcactctttaacaaccttaaatagtaagctttt 15120059  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 416
Target Start/End: Complemental strand, 36643711 - 36643665
Alignment:
Q  370 taagggtactctttcacaaccttaaatagtaagtttttataaaaatt 416  Q
    |||||| ||||||  |||||||||||||||||||||||||| |||||    
T  36643711 taagggcactcttcgacaaccttaaatagtaagtttttatagaaatt 36643665  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 407
Target Start/End: Original strand, 28572531 - 28572587
Alignment:
Q  351 gaaatgataatgggtgccctaagggtactctttcacaaccttaaatagtaagttttt 407  Q
    |||||| ||| | ||||||||||| |||| ||| ||||| |||||||||||||||||    
T  28572531 gaaatgttaacgagtgccctaaggatactttttaacaactttaaatagtaagttttt 28572587  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 375 - 418
Target Start/End: Complemental strand, 50248032 - 50247989
Alignment:
Q  375 gtactctttcacaaccttaaatagtaagtttttataaaaattaa 418  Q
    ||||||||| |||||||||||||||||||||||||| |||||||    
T  50248032 gtactctttaacaaccttaaatagtaagtttttatagaaattaa 50247989  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 351 - 416
Target Start/End: Complemental strand, 34285485 - 34285420
Alignment:
Q  351 gaaatgataatgggtgccctaagggtactctttcacaaccttaaatagtaagtttttataaaaatt 416  Q
    |||||| ||| | |||| ||||||||||||||| | ||| ||||||||||| ||||||||||||||    
T  34285485 gaaatgttaacgagtgctctaagggtactctttaataactttaaatagtaaatttttataaaaatt 34285420  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 416
Target Start/End: Original strand, 46895919 - 46895948
Alignment:
Q  387 aaccttaaatagtaagtttttataaaaatt 416  Q
    ||||||||||||||||||||||||||||||    
T  46895919 aaccttaaatagtaagtttttataaaaatt 46895948  T

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Target: scaffold0370 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0370
Description:

Target: scaffold0370; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 412
Target Start/End: Complemental strand, 516 - 474
Alignment:
Q  370 taagggtactctttcacaaccttaaatagtaagtttttataaa 412  Q
    |||||| ||||||| ||||||||||||||||||||||| ||||    
T  516 taagggcactctttaacaaccttaaatagtaagtttttgtaaa 474  T

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