View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9667_low_12 (Length: 445)
Name: NF9667_low_12
Description: NF9667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9667_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 46 - 421
Target Start/End: Complemental strand, 49821577 - 49821203
Alignment:
| Q |
46 |
cacacctttcgaactcaataagatactaaacaccaaatatcctccataagtatatctccaatttccaaacatcatgcaatatgcaagaatgcgagcactt |
145 |
Q |
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| T |
49821577 |
cacacctttcgaactcaataagatactaaacaccaaatatcctccataagtatatctccaatttccaaacatcatgcaatatgcaagaatgcgagcactt |
49821478 |
T |
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| Q |
146 |
cgttcacaataggtattcttaaagaaagcnnnnnnnnnnnngagcaatgaagttcttcaaaccggagttgttgaaaaagtacacgccacatacacccatt |
245 |
Q |
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| T |
49821477 |
cgttcacaataggtattcttaaagaaagcaaaaaaaaaaa-gagcaatgaagttcttcaaaccggagttgttgaaaaagtacacgccacatacacccatt |
49821379 |
T |
|
| Q |
246 |
gatgctacgtgaacccaaataaacaagtttgaatatttatcaaaccacaaatacatctctagtcaataatacatgttaatcaacaccatataaatgccac |
345 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49821378 |
gatgctacgtgaacccaaataaacaagtttgaatatttatcaaaccacaaatacatctctagtcaataatacatgttaatcaacaccatataaatgccac |
49821279 |
T |
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| Q |
346 |
tttcttccagccaaaatcctcaatcaacgagctctcatctaaaacaaaatatttgcaggtaagttgttgaatctat |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49821278 |
tttcttccagccaaaatcctcaatcaacgagctctcatctaaaacaaaatatttgcaggtaagttgttgaatctat |
49821203 |
T |
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