View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9667_low_15 (Length: 433)
Name: NF9667_low_15
Description: NF9667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9667_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 17 - 425
Target Start/End: Original strand, 9966575 - 9966980
Alignment:
| Q |
17 |
acatagtagttgatttctacggtcaaagaagaaaaactcgaaccttggttcgcaacttgaacccggtttggaatgaaacattgtcgtttaatgttggaga |
116 |
Q |
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| T |
9966575 |
acatagtagttgatttctacggtcaaagaagaaaaactcgaaccttggttcgcgacttgaacccggtttggaatgaaacattgtcgtttaatgttggaga |
9966674 |
T |
|
| Q |
117 |
acgtaacgaaattttcggtgatgtttttgaacttgatgtttatcatgataagcaacacggtccaacccggagagaaaactctctgctgggtcaagttcga |
216 |
Q |
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| T |
9966675 |
acgtaacgaaatttttggtgatgttttggaacttgatgtttatcatgatatgcaacaccgtccaacccggagagaaaactc---gctgggtcaagttcga |
9966771 |
T |
|
| Q |
217 |
cttagctcgacccagtttgtgaaaaaaggtgaagaagctttgatttattatgagttgaagaagaaaagtttgttcaatatggttcaaggaaaagttggct |
316 |
Q |
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| T |
9966772 |
cttagctcgacccagtttgtgaaaaaaggtgaagaagctttgatttattatgagttgaagaagaaaagtttgttcaatatggttcgaggaaaagttggct |
9966871 |
T |
|
| Q |
317 |
tgaaaatttactatgttgatgaagaaattcctcctcgaccatcggcacctgtgccggaaaatccaccggcaccatcgtctgatccaccttcaggaaaagt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| | |||||| |
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| T |
9966872 |
tgaaaatttactatgttgatgaagaaattcctcctcgaccatcggcacctgtgccggaaaatccaccgacaccatcgtctgagccaccttccgtaaaagt |
9966971 |
T |
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| Q |
417 |
agaataatc |
425 |
Q |
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|||| |||| |
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| T |
9966972 |
agaagaatc |
9966980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 17 - 425
Target Start/End: Original strand, 9936406 - 9936814
Alignment:
| Q |
17 |
acatagtagttgatttctacggtcaaagaagaaaaactcgaaccttggttcgcaacttgaacccggtttggaatgaaacattgtcgtttaatgttggaga |
116 |
Q |
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|||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
9936406 |
acatagtaattgatttccacggtcaaagaagaaaaactcgaaccttggttcgcgacttgaacccggtttggaatgaaacattgtcatttaatgttggaga |
9936505 |
T |
|
| Q |
117 |
acgtaacgaaattttcggtgatgtttttgaacttgatgtttatcatgataagcaacacggtccaacccggagagaaaactctctgctgggtcaagttcga |
216 |
Q |
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||||||||||||||| ||||||||||| |||||||||||||||||||| | | ||||| |||||||||||||||||||||| ||| |||||||||||| |
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| T |
9936506 |
acgtaacgaaattttaggtgatgttttggaacttgatgtttatcatgaaatgaaacacagtccaacccggagagaaaactcactg---ggtcaagttcga |
9936602 |
T |
|
| Q |
217 |
cttagctcgacccagtttgtgaaaaaaggtgaagaagctttgatttattatgagttgaagaagaaaagtttgttcaatatggttcaaggaaaagttggct |
316 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9936603 |
cttagctcgacacagtttgtgaaaaaaggtgaagaagctttgatttattatgagttgaagaagaaaagtttgttcaatatggttcaaggaaaagttggct |
9936702 |
T |
|
| Q |
317 |
tgaaaatttactatgttgatgaagaaat---tcctcctcgaccatcggcacctgtgccggaaaatccaccggcaccatcgtctgatccaccttcaggaaa |
413 |
Q |
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|||||||||||||||||||||||||||| |||||||| |||| ||| |||||||||||||||||||||||||||||||||||| ||||| || ||||| |
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| T |
9936703 |
tgaaaatttactatgttgatgaagaaattcctcctcctccaccaccggtacctgtgccggaaaatccaccggcaccatcgtctgagccaccatccggaaa |
9936802 |
T |
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| Q |
414 |
agtagaataatc |
425 |
Q |
| |
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||||||| |||| |
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| T |
9936803 |
agtagaagaatc |
9936814 |
T |
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