View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9667_low_16 (Length: 412)
Name: NF9667_low_16
Description: NF9667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9667_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 18 - 408
Target Start/End: Original strand, 28864317 - 28864707
Alignment:
| Q |
18 |
ttaccataatggaggatcttggccagttcttttatggcttctcaccgcggcttcgatcaagactggaagacagaagattgcagaatgcgcagttaaaatt |
117 |
Q |
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| T |
28864317 |
ttaccataatggaggatcttggccagttcttttatggcttctcaccgcggcttcgatcaagactggaagacagaagattgcagaacacgcacttaaaatt |
28864416 |
T |
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| Q |
118 |
gctgagaccagattgctgaaggacaattggcctgaatattatgatggaaagctaggtagatacattgggaagcaagctaggaaatgccaaacttggtctg |
217 |
Q |
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| T |
28864417 |
gctgagaccagattgctgaaggacaattggccctaatattatgatggaaagctaggtagatgtattgggaagcaagctaggaaatgccaaacttggtctg |
28864516 |
T |
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| Q |
218 |
ttgctggttacttagttgctaagctgatgatggaggatccattacatttgcgtatggtggccttcgaggaagataaactcctaagtcctcaacacagaag |
317 |
Q |
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| T |
28864517 |
ttgctggttacttagttgctaagctgatgatggaggatccattacatttgcgtatggtggccttcgaggaagataaactcctaagtcctcaacacagaag |
28864616 |
T |
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| Q |
318 |
atcaaaatcatgcccatggtgatgaggtaaatgcaatggaaaaagttcaagatgaaacactgtaaatgaaacactgcaaagaattatctac |
408 |
Q |
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| T |
28864617 |
atcaaaatcatgcccatggtgatgaggtaaatgcaatggaaaaagtgcaaggtgaaacactgtaaatgaaacactgcaaagaattatctac |
28864707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 113 - 227
Target Start/End: Complemental strand, 55111013 - 55110899
Alignment:
| Q |
113 |
aaattgctgagaccagattgctgaaggacaattggcctgaatattatgatggaaagctaggtagatacattgggaagcaagctaggaaatgccaaacttg |
212 |
Q |
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| T |
55111013 |
aaattgccgaggccagactgctaaaagacaactggccggagtattatgatggaacacatggtcgatacattggaaagcaggctcgaaaatgccaaacctg |
55110914 |
T |
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| Q |
213 |
gtctgttgctggtta |
227 |
Q |
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|||| |||||||||| |
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| T |
55110913 |
gtctattgctggtta |
55110899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 254
Target Start/End: Complemental strand, 43229488 - 43229379
Alignment:
| Q |
145 |
tggcctgaatattatgatggaaagctaggtagatacattgggaagcaagctaggaaatgccaaacttggtctgttgctggttacttagttgctaagctga |
244 |
Q |
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| T |
43229488 |
tggcctgaatattatgatggtaaacttggaagatatgttgggaaacaggcaagaaaataccaaacatggtctattgcgggttatttggtggcaaagatga |
43229389 |
T |
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| Q |
245 |
tgatggagga |
254 |
Q |
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| T |
43229388 |
tgctggagga |
43229379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 257
Target Start/End: Complemental strand, 43220414 - 43220302
Alignment:
| Q |
145 |
tggcctgaatattatgatggaaagctaggtagatacattgggaagcaagctaggaaatgccaaacttggtctgttgctggttacttagttgctaagctga |
244 |
Q |
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|||||||||||||||||||| ||||| || ||||| |||| | |||| || |||| |||||| |||||| |||| ||||| | ||| ||||| ||| |
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| T |
43220414 |
tggcctgaatattatgatggtaagcttggaagatatgttggtagaaaagcaagaaaataccaaacatggtctattgcaggttatctggtttctaagatga |
43220315 |
T |
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| Q |
245 |
tgatggaggatcc |
257 |
Q |
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|| |||||||||| |
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| T |
43220314 |
tgctggaggatcc |
43220302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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