View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9667_low_18 (Length: 405)
Name: NF9667_low_18
Description: NF9667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9667_low_18 |
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| [»] scaffold0198 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 11 - 389
Target Start/End: Original strand, 1249209 - 1249585
Alignment:
| Q |
11 |
caaaggatggagggaagttgcaagggtttgatccgtcgtggtttgagaataataagtgtttatgtggtgctcccttggccccttgcaaggcctagttaac |
110 |
Q |
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| T |
1249209 |
caaaggatggagggaagttgcaagggtttgatccgtcgtggtttgagaataataagtgtttatgtggtgctcccttggccccttgcaagacctagttaac |
1249308 |
T |
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| Q |
111 |
taaagggatgcatgcttaataaatggacttcatgtattattgtgctcttgtttatgcatggagttaagagaaatgcaatctaattataattagtatggat |
210 |
Q |
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| T |
1249309 |
taaagggatgcatgcttaataaatggacttcatgtattattgtgctcttgtttatgcatggagttaagagaaatgcaatctaattataattagtatggat |
1249408 |
T |
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| Q |
211 |
agtctacatgttttaagtacgttctcatcttcttaagtattattacatgcgtgaatgaaactgcttgatcagtccataaccaatagcaattattatttca |
310 |
Q |
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| T |
1249409 |
agtct--atgttttaagtacgttctcatcttcttaagtattattacatgcgtgaatgaaacttcttgatcagtccataaccaatagcatttattatttca |
1249506 |
T |
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| Q |
311 |
gaactgctatatatcacgattaaatacttcacgaataaatcatgaatcacatgtattccatagttgttaaccataaaat |
389 |
Q |
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| T |
1249507 |
gaactgctatatatcacgattaaatactttacgaataaatcatgaatcacatatattccatagttgttaaccataaaat |
1249585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 12079037 - 12078961
Alignment:
| Q |
19 |
ggagggaagttgcaagggtttgatccgtcgtggtttgagaataataagtgtttatgtggtgctcccttggccccttg |
95 |
Q |
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| T |
12079037 |
ggagggaagttgcaagggtttgatccatcgtcgttttcgcataataagtgtttgtgtggttctcctttgcccccttg |
12078961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 315 - 383
Target Start/End: Original strand, 14959178 - 14959246
Alignment:
| Q |
315 |
tgctatatatcacgattaaatacttcacgaataaatcatgaatcacatgtattccatagttgttaacca |
383 |
Q |
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| T |
14959178 |
tgctatataccacgattaaatacttcaagaataaatcacgaatcacatatattccatagtttttaacca |
14959246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 315 - 383
Target Start/End: Original strand, 39491083 - 39491151
Alignment:
| Q |
315 |
tgctatatatcacgattaaatacttcacgaataaatcatgaatcacatgtattccatagttgttaacca |
383 |
Q |
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| T |
39491083 |
tgctatataccacgattaaatacttcaagaataaatcacgaatcacatatattccatagtttttaacca |
39491151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0198 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0198
Description:
Target: scaffold0198; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 315 - 383
Target Start/End: Original strand, 18421 - 18489
Alignment:
| Q |
315 |
tgctatatatcacgattaaatacttcacgaataaatcatgaatcacatgtattccatagttgttaacca |
383 |
Q |
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| T |
18421 |
tgctatataccacgattaaatacttcaagaataaatcacgaatcacatatatttcatagtttttaacca |
18489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 315 - 383
Target Start/End: Complemental strand, 27585594 - 27585526
Alignment:
| Q |
315 |
tgctatatatcacgattaaatacttcacgaataaatcatgaatcacatgtattccatagttgttaacca |
383 |
Q |
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| T |
27585594 |
tgctatataccacaattaaatacttcaagaataaatcacgaatcacatatattccatagtttttaacca |
27585526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 315 - 384
Target Start/End: Original strand, 2224047 - 2224116
Alignment:
| Q |
315 |
tgctatatatcacgattaaatacttcacgaataaatcatgaatcacatgtattccatagttgttaaccat |
384 |
Q |
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| T |
2224047 |
tgctatataccacgattaaatatttcaagaataaatcacgaatcacatatatttcatagtttttgaccat |
2224116 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 313 - 384
Target Start/End: Original strand, 35181763 - 35181834
Alignment:
| Q |
313 |
actgctatatatcacgattaaatacttcacgaataaatcatgaatcacatgtattccatagttgttaaccat |
384 |
Q |
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| T |
35181763 |
actgctatatatcacgattaaaaactttaagaataaatcacgaattacatatatctcctagtttttaaccat |
35181834 |
T |
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