View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9667_low_21 (Length: 401)
Name: NF9667_low_21
Description: NF9667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9667_low_21 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 12 - 385
Target Start/End: Original strand, 21854784 - 21855157
Alignment:
| Q |
12 |
tggttcgttaatctgtaaccaagcttataaaaggaccccttcagcacaaaaataaagtacacacaatgtatactaaaaactatcattttttgcacacata |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
21854784 |
tggttcgttaatctgtaaccaagcttataaaaggaccccttcagcacaaaaataaagtacacacaatgtatactaaaaactatcattttttgcactcata |
21854883 |
T |
|
| Q |
112 |
ctgatttgaatgtataaatattttcatgtaaccctaacttagacttcgacggttgttaatgtcttctcctttctcttctcttccatctcccaccggccac |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
21854884 |
ctgatttgaatgtataaatattttcatgtaaccttaacttagacttcgacggttgttaatgtcgtctcctttctcttctcttccatctcccaccggccac |
21854983 |
T |
|
| Q |
212 |
caacccttttatccctccatcataaccccaagatctggagacttcttgttttatcgcataaagtactagtagaattaaaaagatccttatttgggtcgtt |
311 |
Q |
| |
|
|||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21854984 |
caacccttttattcctccatgataatcccaagatctggagacttcttgttttatcgcataaagtactagtagaattaaaaagatccttatttgggtcgtt |
21855083 |
T |
|
| Q |
312 |
gattgatttatgagatttcttcctaatcaatgaggcaaaatagctttagctaatctccaatcaccataagtatg |
385 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
21855084 |
gattgatttatgagatttctttctaatcaatgaggcaaaatagctttagctaatctccaatcaccataattatg |
21855157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 177 - 385
Target Start/End: Original strand, 21834529 - 21834737
Alignment:
| Q |
177 |
ctcctttctcttctcttccatctcccaccggccaccaacccttttatccctccatcataaccccaagatctggagacttcttgttttatcgcataaagta |
276 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| | ||||| |||| |||||||||||||||||| ||||||||||| |
|
|
| T |
21834529 |
ctcctttttcttctctttcatctcccaccggccaccaacccttttatccctccatgacaaccctaagacctggagacttcttgtttttccgcataaagta |
21834628 |
T |
|
| Q |
277 |
ctagtagaattaaaaagatccttatttgggtcgttgattgatttatgagatttcttcctaatcaatgaggcaaaatagctttagctaatctccaatcacc |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
21834629 |
ctagtagaattaaaaagatccttatttgggtcgttgattgatttatgagatttctttctaatcaatgaggcaaaatagctttagataatatccaatcacc |
21834728 |
T |
|
| Q |
377 |
ataagtatg |
385 |
Q |
| |
|
|||| |||| |
|
|
| T |
21834729 |
ataattatg |
21834737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 177 - 377
Target Start/End: Original strand, 21859544 - 21859745
Alignment:
| Q |
177 |
ctcctttctcttctcttccatctcccaccggccaccaacccttttatccctccatcataaccccaagatctggagacttcttgttt-tatcgcataaagt |
275 |
Q |
| |
|
||||||||||||||||||||||| | || |||||||||||||| || |||||||| | ||||| |||| || |||||||||||||| |||||| |||||| |
|
|
| T |
21859544 |
ctcctttctcttctcttccatcttcaactggccaccaacccttctacccctccatgacaacccgaagaccttgagacttcttgtttctatcgcttaaagt |
21859643 |
T |
|
| Q |
276 |
actagtagaattaaaaagatccttatttgggtcgttgattgatttatgagatttcttcctaatcaatgaggcaaaatagctttagctaatctccaatcac |
375 |
Q |
| |
|
|| |||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
21859644 |
gctggtagaattaaaaagatccttgtgtgggtcgttgattgatttatgagatttctttctaatcaatgaggcaaaatagttttagctaatctccagtcac |
21859743 |
T |
|
| Q |
376 |
ca |
377 |
Q |
| |
|
|| |
|
|
| T |
21859744 |
ca |
21859745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 177 - 377
Target Start/End: Original strand, 21843902 - 21844103
Alignment:
| Q |
177 |
ctcctttctcttctcttccatctcccaccggccaccaacccttttatccctccatcataaccccaagatctggagacttcttgttt-tatcgcataaagt |
275 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| || |||||||| | || || |||| || |||||||||||||| |||| | |||||| |
|
|
| T |
21843902 |
ctcctttctcttctctgacatctcccaccggccaccaacccttctacccctccatgacaatccgaagaccttgagacttcttgtttctatcacttaaagt |
21844001 |
T |
|
| Q |
276 |
actagtagaattaaaaagatccttatttgggtcgttgattgatttatgagatttcttcctaatcaatgaggcaaaatagctttagctaatctccaatcac |
375 |
Q |
| |
|
|| ||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
21844002 |
gctgctagaattaaaaagatccttatgtgggtcgttgattgatttatgaaatttctttctaatcaatgaggcaaaatagttttagctaatctccaatcac |
21844101 |
T |
|
| Q |
376 |
ca |
377 |
Q |
| |
|
|| |
|
|
| T |
21844102 |
ca |
21844103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 12 - 174
Target Start/End: Original strand, 21834275 - 21834437
Alignment:
| Q |
12 |
tggttcgttaatctgtaaccaagcttataaaaggaccccttcagcacaaaaataaagtacacacaatgtatactaaaaactatcattttttgcacacata |
111 |
Q |
| |
|
||||| |||| ||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
21834275 |
tggtttgttactctgtaaccaagcttataaaacgaccccttcagcacaaaagcaaagtacacgcaatgtatactaaaaactatcattttttgcactcata |
21834374 |
T |
|
| Q |
112 |
ctgatttgaatgtataaatattttcatgtaaccctaacttagacttcgacggttgttaatgtc |
174 |
Q |
| |
|
||||||||||||| |||||||| |||||| |||||||||| | || ||||||||||| |||| |
|
|
| T |
21834375 |
ctgatttgaatgtcgaaatatttacatgtacccctaacttaaattttgacggttgttattgtc |
21834437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 12 - 174
Target Start/End: Original strand, 21859289 - 21859452
Alignment:
| Q |
12 |
tggttcgttaatctgtaaccaagcttataaaaggaccccttcagcacaaaaataaagtacacacaatgtatactaaaaactatcattttttgcacacata |
111 |
Q |
| |
|
||||| |||| |||||||||||| |||||||| |||||||||||||||| |||||||||| ||| || |||||||||| ||| ||||||||| |||| |
|
|
| T |
21859289 |
tggtttgttactctgtaaccaagtatataaaagagccccttcagcacaaaagaaaagtacacaaaatataaactaaaaactctcaatttttgcactcata |
21859388 |
T |
|
| Q |
112 |
ctgatttgaatgtataaatattttcatgta-accctaacttagacttcgacggttgttaatgtc |
174 |
Q |
| |
|
|| | |||||||| ||||||||| |||||| |||||||||| | |||||||||||||| |||| |
|
|
| T |
21859389 |
cttacttgaatgtctaaatatttacatgtaccccctaacttacatttcgacggttgttattgtc |
21859452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 12 - 174
Target Start/End: Original strand, 21843648 - 21843810
Alignment:
| Q |
12 |
tggttcgttaatctgtaaccaagcttataaaaggaccccttcagcacaaaaataaagtacacacaatgtatactaaaaactatcattttttgcacacata |
111 |
Q |
| |
|
||||| |||| |||||||||||| ||||||| | |||||| |||||| || |||||||||||||| || |||||||||| ||||||||||||| ||| |
|
|
| T |
21843648 |
tggtttgttactctgtaaccaagtatataaaaag-cccctttagcacagaacaaaagtacacacaatataaactaaaaactctcattttttgcacttata |
21843746 |
T |
|
| Q |
112 |
ctgatttgaatgtataaatattttcatgta-accctaacttagacttcgacggttgttaatgtc |
174 |
Q |
| |
|
|| | |||||||| ||||||||| |||||| |||||||||| | ||||||||| |||| |||| |
|
|
| T |
21843747 |
cttacttgaatgtctaaatatttacatgtaccccctaacttacatttcgacggtcgttattgtc |
21843810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University