View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9667_low_23 (Length: 393)
Name: NF9667_low_23
Description: NF9667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9667_low_23 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Complemental strand, 41739669 - 41739277
Alignment:
| Q |
1 |
taccatgttaagattattgaagcaatgagagacttgagttggtcttcaagaaataaaggttggtagcaattcttgttgaattgtccatgacttgcaccgt |
100 |
Q |
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| T |
41739669 |
taccatgttaagattattgaagcaatgagagacttgagttggtcttcaagaaataaaggttggtagcaattcttgttgaagtgtgcatgacttgcaccgt |
41739570 |
T |
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| Q |
101 |
accggtcattgtcgcattcaagaatccttgtttatgtcaatgcaagtttaggaacttgattgaacatttgattaatcgagcttaattttaaggttgatta |
200 |
Q |
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| T |
41739569 |
accggtcattgtcgcattcaagaatccttgtttatgtcaatgcaagtttaggaacttgattgaacatttgattaatcgagcttaattttaaggttgataa |
41739470 |
T |
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| Q |
201 |
aacattgaggcggtcaaacttaaacaattcacttgtattcataatactactagtattagttaagattcgaactcaatctattcaaatttcaaacttaact |
300 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
41739469 |
aacattgaggcggtcaaacttaaacgattcacttgtattcataatactactagtattagttaagattcgaactcaatctattcaaatttcaaatttaact |
41739370 |
T |
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| Q |
301 |
tgagaccattaacaaatactagtttagtttgattccgtgcaactttcacttnnnnnnngaatgggactgcgatatgatcaaagcaagttgcgt |
393 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
41739369 |
tgagaccaataacaaatactagtttagtttgattccgtgcaactttcacttaaaaaaagaatgggactgcgatatgatcaaagcaagttgcgt |
41739277 |
T |
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