View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9667_low_33 (Length: 334)

Name: NF9667_low_33
Description: NF9667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9667_low_33
NF9667_low_33
[»] chr6 (6 HSPs)
chr6 (23-130)||(9566691-9566798)
chr6 (203-317)||(11366427-11366541)
chr6 (76-131)||(11366612-11366666)
chr6 (203-280)||(9566541-9566618)
chr6 (259-317)||(78447-78505)
chr6 (260-314)||(10670521-10670575)
[»] chr7 (12 HSPs)
chr7 (23-130)||(36582699-36582806)
chr7 (9-130)||(32979076-32979196)
chr7 (35-130)||(34293704-34293799)
chr7 (203-317)||(10365459-10365573)
chr7 (203-317)||(34293872-34293986)
chr7 (19-126)||(21590713-21590819)
chr7 (76-130)||(10365645-10365699)
chr7 (7-52)||(10365701-10365746)
chr7 (206-317)||(32978784-32978895)
chr7 (208-317)||(24717579-24717689)
chr7 (214-313)||(31038665-31038765)
chr7 (23-87)||(43047853-43047916)
[»] chr8 (7 HSPs)
chr8 (9-130)||(10181920-10182040)
chr8 (203-317)||(38498907-38499019)
chr8 (12-131)||(15050210-15050327)
chr8 (206-317)||(15050505-15050617)
chr8 (76-130)||(38499091-38499145)
chr8 (7-87)||(3763124-3763204)
chr8 (7-52)||(38499147-38499195)
[»] chr1 (17 HSPs)
chr1 (203-317)||(4654134-4654248)
chr1 (203-317)||(8038905-8039019)
chr1 (23-130)||(27786921-27787027)
chr1 (206-317)||(27787208-27787319)
chr1 (203-317)||(47896390-47896505)
chr1 (76-130)||(47896577-47896631)
chr1 (23-118)||(15495749-15495843)
chr1 (23-118)||(29099407-29099502)
chr1 (267-317)||(40581081-40581130)
chr1 (7-52)||(47896633-47896678)
chr1 (206-317)||(10494360-10494472)
chr1 (258-317)||(15495549-15495608)
chr1 (7-52)||(8039150-8039195)
chr1 (206-317)||(25537276-25537389)
chr1 (46-131)||(25537565-25537648)
chr1 (76-130)||(8039094-8039148)
chr1 (206-313)||(14351699-14351808)
[»] chr2 (12 HSPs)
chr2 (9-130)||(1533158-1533278)
chr2 (206-317)||(27888340-27888451)
chr2 (9-131)||(27888631-27888751)
chr2 (12-130)||(40900084-40900201)
chr2 (23-118)||(6705381-6705475)
chr2 (258-318)||(6705180-6705240)
chr2 (23-87)||(9910512-9910575)
chr2 (206-310)||(1532874-1532977)
chr2 (13-53)||(38531460-38531500)
chr2 (206-313)||(38531877-38531986)
chr2 (206-317)||(9910139-9910251)
chr2 (214-313)||(28165380-28165480)
[»] scaffold0725 (1 HSPs)
scaffold0725 (24-102)||(949-1027)
[»] scaffold0088 (1 HSPs)
scaffold0088 (23-113)||(26852-26942)
[»] chr3 (6 HSPs)
chr3 (7-131)||(46743053-46743174)
chr3 (76-127)||(11387337-11387388)
chr3 (7-52)||(11387390-11387435)
chr3 (258-313)||(3460959-3461014)
chr3 (206-317)||(46743354-46743466)
chr3 (21-87)||(31699132-31699197)
[»] chr4 (7 HSPs)
chr4 (9-127)||(45872984-45873100)
chr4 (23-131)||(42677782-42677888)
chr4 (23-120)||(12130392-12130488)
chr4 (206-317)||(42678068-42678179)
chr4 (206-317)||(45872690-45872802)
chr4 (203-317)||(12130182-12130296)
chr4 (206-317)||(56092771-56092883)
[»] chr5 (7 HSPs)
chr5 (213-317)||(26331551-26331656)
chr5 (213-317)||(26331893-26331998)
chr5 (23-117)||(40680747-40680840)
chr5 (258-317)||(40680547-40680606)
chr5 (17-98)||(42221279-42221360)
chr5 (11-98)||(34574299-34574389)
chr5 (206-251)||(40600358-40600403)
[»] scaffold0005 (3 HSPs)
scaffold0005 (203-269)||(269672-269738)
scaffold0005 (76-130)||(269810-269864)
scaffold0005 (7-52)||(269866-269911)
[»] scaffold0083 (1 HSPs)
scaffold0083 (206-317)||(2706-2818)


Alignment Details
Target: chr6 (Bit Score: 88; Significance: 3e-42; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 23 - 130
Target Start/End: Complemental strand, 9566798 - 9566691
Alignment:
Q  23 gtggtggttatgctttttgtggattttcttctacgagttttgttgttgatgatgttttcaaatacacggatgttagctggtgtgggttgtttaaggtgcg 122  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| | ||||||||||||||    
T  9566798 gtggtggttatgctttttgtgggttttcttctacgagttttgttgttgatgaggttttcaaatacatggatgttagctggtgtagtttgtttaaggtgcg 9566699  T
Q  123 gttacatg 130  Q
    ||||||||    
T  9566698 gttacatg 9566691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 203 - 317
Target Start/End: Complemental strand, 11366541 - 11366427
Alignment:
Q  203 taaaagtttatatttgatacatgagtgtttgtttaggtgttccatatatctactgacacttttcctttgtatgttgctctttatgtcttctagcttagca 302  Q
    ||||||||||| |||||||||||||||||||||| ||||||||  |||| ||| ||||||||||||||||||||||||||||| ||||| ||| ||||||    
T  11366541 taaaagtttatgtttgatacatgagtgtttgtttgggtgttccgcatatatacggacacttttcctttgtatgttgctctttaagtcttttaggttagca 11366442  T
Q  303 ttccttgtgcttgct 317  Q
    |||||| ||||||||    
T  11366441 ttccttatgcttgct 11366427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 131
Target Start/End: Complemental strand, 11366666 - 11366612
Alignment:
Q  76 gttttcaaatacacggatgttagctggtgtgggttgtttaaggtgcggttacatga 131  Q
    |||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||    
T  11366666 gttttcaaatacacggatgttagctggtgt-ggttttttaatgtgcggttacatga 11366612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 280
Target Start/End: Complemental strand, 9566618 - 9566541
Alignment:
Q  203 taaaagtttatatttgatacatgagtgtttgtttaggtgttccatatatctactgacacttttcctttgtatgttgct 280  Q
    ||||||||||||||||||| ||||||||||||||  || ||||  |||| ||| ||||||||||||||| ||| ||||    
T  9566618 taaaagtttatatttgatagatgagtgtttgtttgagtattccgcatatatacggacacttttcctttgcatggtgct 9566541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 317
Target Start/End: Complemental strand, 78505 - 78447
Alignment:
Q  259 cacttttcctttgtatgttgctctttatgtcttctagcttagcattccttgtgcttgct 317  Q
    ||||||||||||||||||| || |||| |||| |||||  |||||| ||||||||||||    
T  78505 cacttttcctttgtatgttcctatttaagtctcctagccaagcatttcttgtgcttgct 78447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 314
Target Start/End: Original strand, 10670521 - 10670575
Alignment:
Q  260 acttttcctttgtatgttgctctttatgtcttctagcttagcattccttgtgctt 314  Q
    ||||||||||||||||||| | |||| |||| ||| ||||||||| |||||||||    
T  10670521 acttttcctttgtatgttgttttttaagtctcctaacttagcattacttgtgctt 10670575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 7e-40; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 23 - 130
Target Start/End: Complemental strand, 36582806 - 36582699
Alignment:
Q  23 gtggtggttatgctttttgtggattttcttctacgagttttgttgttgatgatgttttcaaatacacggatgttagctggtgtgggttgtttaaggtgcg 122  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||| |||||||| |||||    
T  36582806 gtggtggttatgctttttgtgggttttcttctacgagttttgttgttgatgaggttttcaaatacacggatcttaactggtgtggtttgtttaaagtgcg 36582707  T
Q  123 gttacatg 130  Q
    ||||||||    
T  36582706 gttacatg 36582699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 9 - 130
Target Start/End: Complemental strand, 32979196 - 32979076
Alignment:
Q  9 tggtggtggtgcttgtggtggttatgctttttgtggattttcttctacgagttttgttgttgatgatgttttcaaatacacggatgttagctggtgtggg 108  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||| |||||| ||||||||||  |||||||||||  ||||| |||| ||||||||     
T  32979196 tggtggtggtgcttgtggtagttatgctttttgtgggttttcttctatgagttt-gttgttgatggagttttcaaataggcggatattagatggtgtggc 32979098  T
Q  109 ttgtttaaggtgcggttacatg 130  Q
    ||||||||||||||||||||||    
T  32979097 ttgtttaaggtgcggttacatg 32979076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 35 - 130
Target Start/End: Original strand, 34293704 - 34293799
Alignment:
Q  35 ctttttgtggattttcttctacgagttttgttgttgatgatgttttcaaatacacggatgttagctggtgtgggttgtttaaggtgcggttacatg 130  Q
    |||||||||| |||||||||| |||||||||||||||||| ||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||    
T  34293704 ctttttgtgggttttcttctaggagttttgttgttgatgaggttttcaaatacatggatgttagctgatgtggtttgtttaaggtgcggttacatg 34293799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 203 - 317
Target Start/End: Complemental strand, 10365573 - 10365459
Alignment:
Q  203 taaaagtttatatttgatacatgagtgtttgtttaggtgttccatatatctactgacacttttcctttgtatgttgctctttatgtcttctagcttagca 302  Q
    |||||||||||||||||||||||||||||||||| | |||| || |||| ||| | ||||||||| || |||| ||||||||| ||||||||||||||||    
T  10365573 taaaagtttatatttgatacatgagtgtttgtttggctgttgcacatatatacagtcacttttcccttctatggtgctctttaagtcttctagcttagca 10365474  T
Q  303 ttccttgtgcttgct 317  Q
    ||| |||||||||||    
T  10365473 ttctttgtgcttgct 10365459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 203 - 317
Target Start/End: Original strand, 34293872 - 34293986
Alignment:
Q  203 taaaagtttatatttgatacatgagtgtttgtttaggtgttccatatatctactgacacttttcctttgtatgttgctctttatgtcttctagcttagca 302  Q
    ||||||||||||||||||||||| ||||||||||  || ||||  |||| ||| ||||||||||||||||||| ||||||||  ||||||||||||| ||    
T  34293872 taaaagtttatatttgatacatgggtgtttgtttgagtattccgcatatatacggacacttttcctttgtatggtgctctttcagtcttctagcttaaca 34293971  T
Q  303 ttccttgtgcttgct 317  Q
    ||  |||||||||||    
T  34293972 ttttttgtgcttgct 34293986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 126
Target Start/End: Original strand, 21590713 - 21590819
Alignment:
Q  19 gcttgtggtggttatgctttttgtggattttcttctacgagttttgttgttgatgatgttttcaaatacacggatgttagctggtgtgggttgtttaagg 118  Q
    ||||||||||||| |||||||||||| |||||||||| ||| ||||||| |||||  ||||||||||||| ||||||||   || |||  ||||||||||    
T  21590713 gcttgtggtggttgtgctttttgtgggttttcttctatgag-tttgttgatgatggagttttcaaatacatggatgttaaacggcgtgacttgtttaagg 21590811  T
Q  119 tgcggtta 126  Q
    ||||||||    
T  21590812 tgcggtta 21590819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 76 - 130
Target Start/End: Complemental strand, 10365699 - 10365645
Alignment:
Q  76 gttttcaaatacacggatgttagctggtgtgggttgtttaaggtgcggttacatg 130  Q
    ||||||||| ||||||||||||||||||||||  |||||||||||||||||||||    
T  10365699 gttttcaaacacacggatgttagctggtgtggtctgtttaaggtgcggttacatg 10365645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 10365746 - 10365701
Alignment:
Q  7 tttggtggtggtgcttgtggtggttatgctttttgtggattttctt 52  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||    
T  10365746 tttggtggtggtgcttgttgtggttatgctttttgtgggttttctt 10365701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 206 - 317
Target Start/End: Complemental strand, 32978895 - 32978784
Alignment:
Q  206 aagtttatatttgatacatgagtgtttgtttaggtgttccatatatctactgacacttttcctttgtatgttgctctttatgtcttctagcttagcattc 305  Q
    |||||| | |||||||||||||||||||||| | || |||  ||||  || |||||||||| ||| |||||| ||||||| ||||  |||||||  ||||    
T  32978895 aagtttgtttttgatacatgagtgtttgtttggatgatccgcatataaacagacacttttcttttatatgttactctttaagtctcatagcttaatattc 32978796  T
Q  306 cttgtgcttgct 317  Q
    ||| ||||||||    
T  32978795 cttatgcttgct 32978784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 317
Target Start/End: Complemental strand, 24717689 - 24717579
Alignment:
Q  208 gtttatatttgatacatgagtgtttgtttaggtgttccatatatctac-tgacacttttcctttgtatgttgctctttatgtcttctagcttagcattcc 306  Q
    |||| |||||||| ||||| ||||||||| ||||||||  |||| ||| | |||||||| |||||||| || ||  ||| ||||  ||||| ||||||||    
T  24717689 gtttgtatttgatgcatgaatgtttgtttgggtgttccgcatatatacatcacactttttctttgtatcttcctacttaagtctcatagctaagcattcc 24717590  T
Q  307 ttgtgcttgct 317  Q
    |||||||||||    
T  24717589 ttgtgcttgct 24717579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 313
Target Start/End: Complemental strand, 31038765 - 31038665
Alignment:
Q  214 atttgatacatgagtgtttgtttaggtgttccatatatctactg-acacttttcctttgtatgttgctctttatgtcttctagcttagcattccttgtgc 312  Q
    |||||||  ||||||||||||||  ||||||| | ||| |||   ||||||||||||||||||||||| |||| || |  |||| |||||||||||||||    
T  31038765 atttgatgtatgagtgtttgtttgagtgttccgtgtatatacgacacacttttcctttgtatgttgctatttaagtatcttagcctagcattccttgtgc 31038666  T
Q  313 t 313  Q
    |    
T  31038665 t 31038665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 43047853 - 43047916
Alignment:
Q  23 gtggtggttatgctttttgtggattttcttctacgagttttgttgttgatgatgttttcaaatac 87  Q
    |||||||||||| ||||||||| |||||||||| ||| ||||||||| |||  |||||| |||||    
T  43047853 gtggtggttatgttttttgtgggttttcttctatgag-tttgttgttaatggggttttctaatac 43047916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 9 - 130
Target Start/End: Complemental strand, 10182040 - 10181920
Alignment:
Q  9 tggtggtggtgcttgtggtggttatgctttttgtggattttcttctacgagttttgttgttgatgatgttttcaaatacacggatgttagctggtgtggg 108  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||  ||||||||||||||||||||||  |||||||      
T  10182040 tggtggttgtgcttgtggtggttatgctttttgtggattttcttctatgagttt-gttgttgatggggttttcaaatacacggatgttatatggtgtgac 10181942  T
Q  109 ttgtttaaggtgcggttacatg 130  Q
    ||||||||||||||||||||||    
T  10181941 ttgtttaaggtgcggttacatg 10181920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 203 - 317
Target Start/End: Complemental strand, 38499019 - 38498907
Alignment:
Q  203 taaaagtttatatttgatacatgagtgtttgtttaggtgttccatatatctactgacacttttcctttgtatgttgctctttatgtcttctagcttagca 302  Q
    |||||||||||||| |||||||| |||||||||| ||||||||  ||||   | ||||||||||||||||||||||||||||| ||||| | ||||| ||    
T  38499019 taaaagtttatattcgatacatgggtgtttgtttgggtgttccgcatatg--cggacacttttcctttgtatgttgctctttaagtcttatggcttaaca 38498922  T
Q  303 ttccttgtgcttgct 317  Q
    |||| ||||||||||    
T  38498921 ttccctgtgcttgct 38498907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 15050210 - 15050327
Alignment:
Q  12 tggtggtgcttgtggtggttatgctttttgtggattttcttctacgagttttgttgttgatgatgttttcaaatacacggatgttagctggtgtgggttg 111  Q
    |||||||||||||||||| || ||||||||||  |||||||||| ||| ||||||||||| |   ||||||||||||  ||||||||  ||||| | |||    
T  15050210 tggtggtgcttgtggtggctacgctttttgtgtgttttcttctatgag-tttgttgttgaggggattttcaaataca-tgatgttagacggtgttgcttg 15050307  T
Q  112 tttaaggtgcggttacatga 131  Q
    ||||||||||||||||||||    
T  15050308 tttaaggtgcggttacatga 15050327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 206 - 317
Target Start/End: Original strand, 15050505 - 15050617
Alignment:
Q  206 aagtttatatttgatacatgagtgtttgtttaggtgttccatatatctactg-acacttttcctttgtatgttgctctttatgtcttctagcttagcatt 304  Q
    |||||| ||||||||||||| ||||||||||  |||||||  |||| ||| | ||||||||||| ||||||||| | ||||  ||| ||||| |||||||    
T  15050505 aagtttgtatttgatacatgggtgtttgtttgtgtgttccgcatatatacggcacacttttcctgtgtatgttgttttttaattctcctagcctagcatt 15050604  T
Q  305 ccttgtgcttgct 317  Q
    |||||||||||||    
T  15050605 ccttgtgcttgct 15050617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 76 - 130
Target Start/End: Complemental strand, 38499145 - 38499091
Alignment:
Q  76 gttttcaaatacacggatgttagctggtgtgggttgtttaaggtgcggttacatg 130  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||    
T  38499145 gttttcaaatacacggatgttaactggtgtggtttgtttaaggtgcagttacatg 38499091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 7 - 87
Target Start/End: Original strand, 3763124 - 3763204
Alignment:
Q  7 tttggtggtggtgctt-gtggtggttatgctttttgtggattttcttctacgagttttgttgttgatgatgttttcaaatac 87  Q
    ||||||||||||| || |||||||||||| ||||||||| |||||||||| ||| ||||||||| |||| ||||||||||||    
T  3763124 tttggtggtggtggttagtggtggttatgttttttgtgggttttcttctatgag-tttgttgttaatgaagttttcaaatac 3763204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 38499195 - 38499147
Alignment:
Q  7 tttggtggtggtgcttgt---ggtggttatgctttttgtggattttctt 52  Q
    ||||||||||||||||||   |||||||||||||||||||| |||||||    
T  38499195 tttggtggtggtgcttgtaccggtggttatgctttttgtgggttttctt 38499147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 4e-32; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 203 - 317
Target Start/End: Original strand, 4654134 - 4654248
Alignment:
Q  203 taaaagtttatatttgatacatgagtgtttgtttaggtgttccatatatctactgacacttttcctttgtatgttgctctttatgtcttctagcttagca 302  Q
    ||||| |||||||||||||||||||||||| |||  |||||||| |||| ||  |||||||| |||||||||||||||||||| ||||||||||||||||    
T  4654134 taaaaatttatatttgatacatgagtgtttatttgagtgttccacatatatagagacactttccctttgtatgttgctctttaagtcttctagcttagca 4654233  T
Q  303 ttccttgtgcttgct 317  Q
    |||| ||||||||||    
T  4654234 ttccctgtgcttgct 4654248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 203 - 317
Target Start/End: Complemental strand, 8039019 - 8038905
Alignment:
Q  203 taaaagtttatatttgatacatgagtgtttgtttaggtgttccatatatctactgacacttttcctttgtatgttgctctttatgtcttctagcttagca 302  Q
    |||||||||||||||||| ||||||||||||||| ||||||||  |||| |||  ||||||||||||| |||| || |||||| ||||||||||||||||    
T  8039019 taaaagtttatatttgatgcatgagtgtttgtttgggtgttccgcatatatacatacacttttcctttatatggtgttctttaagtcttctagcttagca 8038920  T
Q  303 ttccttgtgcttgct 317  Q
    |||||||||||||||    
T  8038919 ttccttgtgcttgct 8038905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 130
Target Start/End: Original strand, 27786921 - 27787027
Alignment:
Q  23 gtggtggttatgctttttgtggattttcttctacgagttttgttgttgatgatgttttcaaatacacggatgttagctggtgtgggttgtttaaggtgcg 122  Q
    |||||||||||||||||||||| ||||||| || |||||| ||||||||||  ||||||||||||||||||||||| |||||||| |||||||||||||     
T  27786921 gtggtggttatgctttttgtgggttttcttttatgagttt-gttgttgatggggttttcaaatacacggatgttagatggtgtggcttgtttaaggtgca 27787019  T
Q  123 gttacatg 130  Q
    ||||||||    
T  27787020 gttacatg 27787027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 206 - 317
Target Start/End: Original strand, 27787208 - 27787319
Alignment:
Q  206 aagtttatatttgatacatgagtgtttgtttaggtgttccatatatctactgacacttttcctttgtatgttgctctttatgtcttctagcttagcattc 305  Q
    |||||| |||||||||||||  ||||||||| ||||||||  |||| ||  |||||||||| ||||||||||| |||||| |||| ||||||||||||||    
T  27787208 aagtttgtatttgatacatggctgtttgtttgggtgttccgcatatatatggacacttttcgtttgtatgttgttctttaagtctcctagcttagcattc 27787307  T
Q  306 cttgtgcttgct 317  Q
    ||||||||||||    
T  27787308 cttgtgcttgct 27787319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 203 - 317
Target Start/End: Complemental strand, 47896505 - 47896390
Alignment:
Q  203 taaaagtttatatttgatacatgagtgtttgtttaggtgttccatatatctactgacacttttcctttgtatgttgctc-tttatgtcttctagcttagc 301  Q
    ||||||||||||||||||||||| |||||||||| | ||||||  |||| ||| ||||||||| ||||||||||||||| |||| |||||||| |||| |    
T  47896505 taaaagtttatatttgatacatgggtgtttgtttggatgttccgcatatatacggacactttttctttgtatgttgctcttttaagtcttctaacttaac 47896406  T
Q  302 attccttgtgcttgct 317  Q
    ||||||| ||||||||    
T  47896405 attccttatgcttgct 47896390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 76 - 130
Target Start/End: Complemental strand, 47896631 - 47896577
Alignment:
Q  76 gttttcaaatacacggatgttagctggtgtgggttgtttaaggtgcggttacatg 130  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  47896631 gttttcaaatacacggatgttagctggtgtggtttgtttaaggtgcggttacatg 47896577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 118
Target Start/End: Complemental strand, 15495843 - 15495749
Alignment:
Q  23 gtggtggttatgctttttgtggattttcttctacgagttttgttgttgatgatgttttcaaatacacggatgttagctggtgtgggttgtttaagg 118  Q
    |||||| ||||||||||||  | |||||||||| |||||| ||||||||||| ||||||||||||| |||||||||  ||||||| ||||||||||    
T  15495843 gtggtgattatgctttttgaaggttttcttctatgagttt-gttgttgatgaggttttcaaatacatggatgttagacggtgtggcttgtttaagg 15495749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 23 - 118
Target Start/End: Complemental strand, 29099502 - 29099407
Alignment:
Q  23 gtggtggttatgctttttgtggattttcttctacgagttttgttgttga-tgatgttttcaaatacacggatgttagctggtgtgggttgtttaagg 118  Q
    |||||||||| ||||||||||| |||||||||| ||| |||||||||||  |  |||||||||| || ||||||||| |||||||| ||||||||||    
T  29099502 gtggtggttacgctttttgtgggttttcttctatgag-tttgttgttgaggggggttttcaaatgcatggatgttagatggtgtggcttgtttaagg 29099407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 267 - 317
Target Start/End: Original strand, 40581081 - 40581130
Alignment:
Q  267 ctttgtatgttgctctttatgtcttctagcttagcattccttgtgcttgct 317  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  40581081 ctttgtatgttgct-tttaagtcttctagcttagcattccttgtgcttgct 40581130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 47896678 - 47896633
Alignment:
Q  7 tttggtggtggtgcttgtggtggttatgctttttgtggattttctt 52  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||    
T  47896678 tttggtggtggtgcttgtggtggctatgctttttgtgggttttctt 47896633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 206 - 317
Target Start/End: Complemental strand, 10494472 - 10494360
Alignment:
Q  206 aagtttatatttgatacatgagtgtttgtttaggtgttccatatatctactg-acacttttcctttgtatgttgctctttatgtcttctagcttagcatt 304  Q
    |||||| ||||||||  |||||||||||||| |||||||   |||| |||   ||||||||||||||||||||||| |||| |||| |||||    ||||    
T  10494472 aagtttgtatttgatgtatgagtgtttgtttgggtgttctgcatatatacaacacacttttcctttgtatgttgctatttaagtctcctagccagacatt 10494373  T
Q  305 ccttgtgcttgct 317  Q
    |||||||||||||    
T  10494372 ccttgtgcttgct 10494360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 258 - 317
Target Start/End: Complemental strand, 15495608 - 15495549
Alignment:
Q  258 acacttttcctttgtatgttgctctttatgtcttctagcttagcattccttgtgcttgct 317  Q
    ||||||||||||||||||||||| |||| |||| ||||| ||||||| ||||||| ||||    
T  15495608 acacttttcctttgtatgttgctttttaagtctcctagcctagcatttcttgtgcatgct 15495549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 8039195 - 8039150
Alignment:
Q  7 tttggtggtggtgcttgtggtggttatgctttttgtggattttctt 52  Q
    |||||||||||||||||||||| ||||||||||||||  |||||||    
T  8039195 tttggtggtggtgcttgtggtgattatgctttttgtgtgttttctt 8039150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 206 - 317
Target Start/End: Complemental strand, 25537389 - 25537276
Alignment:
Q  206 aagtttatatttgatacatgagtgtttgtttaggtgttccatatatctac-tgacacttttcctttgtatgttg-ctctttatgtcttctagcttagcat 303  Q
    |||||| ||||||||||||| ||||||||||  |||||||  |||| |||   ||||||||||| |||||||||  | |||| |||| ||||| ||||||    
T  25537389 aagtttgtatttgatacatgggtgtttgtttgtgtgttccgcatatatacgacacacttttcctgtgtatgttgtttttttaagtctcctagcctagcat 25537290  T
Q  304 tccttgtgcttgct 317  Q
    || |||||||||||    
T  25537289 tctttgtgcttgct 25537276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 46 - 131
Target Start/End: Complemental strand, 25537648 - 25537565
Alignment:
Q  46 ttttcttctacgagttttgttgttgatgatgttttcaaatacacggatgttagctggtgtgggttgtttaaggtgcggttacatga 131  Q
    |||||||||| |||||| |||||||| |   |||||||||||| | |||||||  ||||||| |||||||||||||||||||||||    
T  25537648 ttttcttctatgagttt-gttgttgaggggattttcaaatacatg-atgttagacggtgtggcttgtttaaggtgcggttacatga 25537565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 130
Target Start/End: Complemental strand, 8039148 - 8039094
Alignment:
Q  76 gttttcaaatacacggatgttagctggtgtgggttgtttaaggtgcggttacatg 130  Q
    ||||||| | ||||| ||||||||||||||||  ||||||||||| |||||||||    
T  8039148 gttttcatacacacgcatgttagctggtgtggtctgtttaaggtgtggttacatg 8039094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 313
Target Start/End: Original strand, 14351699 - 14351808
Alignment:
Q  206 aagtttatatttgatacatgagtgtttgtttaggtgttccatatatctactg-acacttttcctttgtatgttgct-ctttatgtcttctagcttagcat 303  Q
    |||||||||||||||  |||  ||||||||| ||||||||  |||| |||   ||||||||||||||||||||||| ||||| |  | ||||  ||||||    
T  14351699 aagtttatatttgatgtatggttgtttgtttgggtgttccgcatatatacgacacacttttcctttgtatgttgctactttaagattcctagtctagcat 14351798  T
Q  304 tccttgtgct 313  Q
    ||||||||||    
T  14351799 tccttgtgct 14351808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 9 - 130
Target Start/End: Complemental strand, 1533278 - 1533158
Alignment:
Q  9 tggtggtggtgcttgtggtggttatgctttttgtggattttcttctacgagttttgttgttgatgatgttttcaaatacacggatgttagctggtgtggg 108  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||| ||| |||||||||||||  |||||||||||||||||| |||| |||| ||      
T  1533278 tggtggtggtgcttgtggtggttatgctttttatgggttttcttctatgag-tttgttgttgatggggttttcaaatacacggatattagatggtatgac 1533180  T
Q  109 ttgtttaaggtgcggttacatg 130  Q
    |||||||||||||| |||||||    
T  1533179 ttgtttaaggtgcgattacatg 1533158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 206 - 317
Target Start/End: Complemental strand, 27888451 - 27888340
Alignment:
Q  206 aagtttatatttgatacatgagtgtttgtttaggtgttccatatatctactgacacttttcctttgtatgttgctctttatgtcttctagcttagcattc 305  Q
    |||||| |||||||||||||||||||||||| ||||||||  |||| ||| |||||||||||||||||||||||||||||  ||| |||| |||||||||    
T  27888451 aagtttgtatttgatacatgagtgtttgtttgggtgttccgcatatatacggacacttttcctttgtatgttgctctttaattctcctagtttagcattc 27888352  T
Q  306 cttgtgcttgct 317  Q
     |||||||||||    
T  27888351 gttgtgcttgct 27888340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 9 - 131
Target Start/End: Complemental strand, 27888751 - 27888631
Alignment:
Q  9 tggtggtggtgcttgtggtggttatgctttttgtggattttcttctacgagttttgttgttgatgatgttttcaaatacacggatgttagctggtgtggg 108  Q
    ||||||||||| ||||||||||||||||||| |||| ||||| |||| |||||| ||||||||||  ||||||||| ||||||||||||||||| ||||     
T  27888751 tggtggtggtgtttgtggtggttatgctttt-gtgggttttcctctatgagttt-gttgttgatggggttttcaaacacacggatgttagctggcgtggc 27888654  T
Q  109 ttgtttaaggtgcggttacatga 131  Q
    ||||||||  |||||||||||||    
T  27888653 ttgtttaaactgcggttacatga 27888631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 130
Target Start/End: Complemental strand, 40900201 - 40900084
Alignment:
Q  12 tggtggtgcttgtggtggttatgctttttgtggattttcttctacgagttttgttgttgatgatgttttcaaatacacggatgttagctggtgtgggttg 111  Q
    |||||||| | |||||||||||||||||||||| |||||||| | ||| ||||||| |||||| ||||||||||||| |||||||||  |   ||| |||    
T  40900201 tggtggtggtggtggtggttatgctttttgtgggttttcttccatgag-tttgttgatgatgaggttttcaaatacatggatgttagacgtcatggcttg 40900103  T
Q  112 tttaaggtgcggttacatg 130  Q
    |||||||| ||||||||||    
T  40900102 tttaaggttcggttacatg 40900084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 118
Target Start/End: Complemental strand, 6705475 - 6705381
Alignment:
Q  23 gtggtggttatgctttttgtggattttcttctacgagttttgttgttgatgatgttttcaaatacacggatgttagctggtgtgggttgtttaagg 118  Q
    |||||| ||||| ||||||  | ||||||| || |||||| ||||||||| ||||||||||||||| |||||||||  ||||||| ||||||||||    
T  6705475 gtggtgattatgttttttgaaggttttcttatatgagttt-gttgttgataatgttttcaaatacatggatgttagacggtgtggcttgtttaagg 6705381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 258 - 318
Target Start/End: Complemental strand, 6705240 - 6705180
Alignment:
Q  258 acacttttcctttgtatgttgctctttatgtcttctagcttagcattccttgtgcttgctg 318  Q
    ||||||||||||||||||||| | |||| |||| ||||| ||||||||||| |||||||||    
T  6705240 acacttttcctttgtatgttgttttttaagtctcctagcctagcattccttatgcttgctg 6705180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 9910575 - 9910512
Alignment:
Q  23 gtggtggttatgctttttgtggattttcttctacgagttttgttgttgatgatgttttcaaatac 87  Q
    |||||||||||| |||||||||||||||||||| ||| ||||||||| |||  ||||||||||||    
T  9910575 gtggtggttatgttttttgtggattttcttctatgag-tttgttgttaatggggttttcaaatac 9910512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 310
Target Start/End: Complemental strand, 1532977 - 1532874
Alignment:
Q  206 aagtttatatttgatacatgagtgtttgtttaggtgttccatatatctactgacacttttcctttgtatgttgctctttatgtcttctagcttagcattc 305  Q
    |||||| |||||||||||||  || |||||| | ||||||  |||| ||  |||||||||| ||||||||||||||||||  ||| ||| ||||| ||||    
T  1532977 aagtttgtatttgatacatggatgattgtttggatgttccgcatatatatagacacttttcgtttgtatgttgctctttaaatctcctaacttag-attc 1532879  T
Q  306 cttgt 310  Q
    |||||    
T  1532878 cttgt 1532874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 38531460 - 38531500
Alignment:
Q  13 ggtggtgcttgtggtggttatgctttttgtggattttcttc 53  Q
    |||||||||||||||||||||| ||||||||| ||||||||    
T  38531460 ggtggtgcttgtggtggttatgttttttgtgggttttcttc 38531500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 313
Target Start/End: Original strand, 38531877 - 38531986
Alignment:
Q  206 aagtttatatttgatacatgagtgtttgtttaggtgttccatatatctac-tgacacttttcctttgtatgttgct-ctttatgtcttctagcttagcat 303  Q
    |||||| ||||||||  |||||||||||||| | |||||| ||||| |||   |||||||| |||||||||||||| ||||| | || ||||  |||| |    
T  38531877 aagtttgtatttgatgtatgagtgtttgtttggatgttccgtatatatacaacacactttttctttgtatgttgctactttaagactcctagtctagcgt 38531976  T
Q  304 tccttgtgct 313  Q
    ||||||||||    
T  38531977 tccttgtgct 38531986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 317
Target Start/End: Complemental strand, 9910251 - 9910139
Alignment:
Q  206 aagtttatatttgatacatgagtgtttgtttaggtgttccatatatctactg-acacttttcctttgtatgttgctctttatgtcttctagcttagcatt 304  Q
    ||||||||||||||  |||| |||||||||| | ||||||  |||| |||   |||||||||||||||||||| ||  ||| ||||  ||||  | ||||    
T  9910251 aagtttatatttgaatcatgggtgtttgtttggatgttccgcatatatacgacacacttttcctttgtatgttcctacttaagtctcatagccaaacatt 9910152  T
Q  305 ccttgtgcttgct 317  Q
    |||||||||||||    
T  9910151 ccttgtgcttgct 9910139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 313
Target Start/End: Original strand, 28165380 - 28165480
Alignment:
Q  214 atttgatacatgagtgtttgtttaggtgttccatatatctactg-acacttttcctttgtatgttgctctttatgtcttctagcttagcattccttgtgc 312  Q
    |||||||  ||||||||||||||  ||||||| | ||| |||   ||||||||||||| ||||||||| |||| || |  |||| |||||||||||||||    
T  28165380 atttgatgtatgagtgtttgtttgagtgttccgtgtatatacgacacacttttcctttatatgttgctatttaagtatcttagcctagcattccttgtgc 28165479  T
Q  313 t 313  Q
    |    
T  28165480 t 28165480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0725 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0725
Description:

Target: scaffold0725; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 24 - 102
Target Start/End: Complemental strand, 1027 - 949
Alignment:
Q  24 tggtggttatgctttttgtggattttcttctacgagttttgttgttgatgatgttttcaaatacacggatgttagctgg 102  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  1027 tggtggttatgttttttgtgggttttcttctacgagttttgttgttgatgaggttttcaaatacacggatgttagctgg 949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 23 - 113
Target Start/End: Complemental strand, 26942 - 26852
Alignment:
Q  23 gtggtggttatgctttttgtggattttcttctacgagttttgttgttgatgatgttttcaaatacacggatgttagctggtgtgggttgtt 113  Q
    |||||||||||| ||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||| |||| |||||    
T  26942 gtggtggttatgttttttgtgggttttcttctacgaattttgttgttgatgaggttttcaaatacacggatgttaactggcgtggtttgtt 26852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 9e-27; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 7 - 131
Target Start/End: Original strand, 46743053 - 46743174
Alignment:
Q  7 tttggtggtggtgcttgtggtggttatgctttttgtggattttcttctacgagttttgttgttgatgatgttttcaaatacacggatgttagctggtgtg 106  Q
    |||||||||||  || |||||||||||||||||| | | |||||||||| |||||| ||||||||||  ||||||||||||||||||||||| |||||||    
T  46743053 tttggtggtgg--ctagtggtggttatgctttttataggttttcttctatgagttt-gttgttgatggggttttcaaatacacggatgttagatggtgtg 46743149  T
Q  107 ggttgtttaaggtgcggttacatga 131  Q
    | |||||||||||||| || |||||    
T  46743150 gcttgtttaaggtgcgattgcatga 46743174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 76 - 127
Target Start/End: Complemental strand, 11387388 - 11387337
Alignment:
Q  76 gttttcaaatacacggatgttagctggtgtgggttgtttaaggtgcggttac 127  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  11387388 gttttcaaatacacggatgttagctggtgtggtttgtttaaggtgcggttac 11387337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 11387435 - 11387390
Alignment:
Q  7 tttggtggtggtgcttgtggtggttatgctttttgtggattttctt 52  Q
    |||||||||||||||||||||||||||||||||||||| |||||||    
T  11387435 tttggtggtggtgcttgtggtggttatgctttttgtgggttttctt 11387390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 258 - 313
Target Start/End: Original strand, 3460959 - 3461014
Alignment:
Q  258 acacttttcctttgtatgttgctctttatgtcttctagcttagcattccttgtgct 313  Q
    ||||||||||||||||||||||| |||| |||||||||| |||||||||| |||||    
T  3460959 acacttttcctttgtatgttgctatttaagtcttctagcctagcattcctcgtgct 3461014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 206 - 317
Target Start/End: Original strand, 46743354 - 46743466
Alignment:
Q  206 aagtttatatttgatacatgagtgtttgtttaggtgttccatatatctactga-cacttttcctttgtatgttgctctttatgtcttctagcttagcatt 304  Q
    |||||| ||||||||||||| ||| |||||| | ||||||  | || |||  | |||||||  ||||||||||||||||||  ||| ||| |||||||||    
T  46743354 aagtttgtatttgatacatgggtgattgtttggatgttccgcacatatacgaaacactttttgtttgtatgttgctctttaaatctcctaacttagcatt 46743453  T
Q  305 ccttgtgcttgct 317  Q
    |||||||||||||    
T  46743454 ccttgtgcttgct 46743466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 31699197 - 31699132
Alignment:
Q  21 ttgtggtggttatgctttttgtggattttcttctacgagttttgttgttgatgatgttttcaaatac 87  Q
    |||||||||||||| ||||||||| |||||||||| ||| ||||||||| |||  ||||||||||||    
T  31699197 ttgtggtggttatgttttttgtgggttttcttctatgag-tttgttgttaatggggttttcaaatac 31699132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 127
Target Start/End: Complemental strand, 45873100 - 45872984
Alignment:
Q  9 tggtggtggtgcttgtggtggttatgctttttgtggattttcttctacgagttttgttgttgatgatgttttcaaatacacggatgttagctggtgtggg 108  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||| ||| ||||||||||| |  ||||||| ||||| |||||||||  ||| ||      
T  45873100 tggtggtggtgcttgtggtggttatgctttttatgggttttcttctatgag-tttgttgttga-ggggttttcagatacatggatgttagacggtatgac 45873003  T
Q  109 ttgtttaaggtgcggttac 127  Q
    |||||||||||||||||||    
T  45873002 ttgtttaaggtgcggttac 45872984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 131
Target Start/End: Original strand, 42677782 - 42677888
Alignment:
Q  23 gtggtggttatgctttttgtggattttcttctacgagttttgttgttgatgatgttttcaaatacacggatgttagctggtgtgggttgtttaaggtgcg 122  Q
    |||||||||||||||||||||| |||||||||| ||| |||||||||||||| |||||| |||||| |||||||||    ||||  ||||||||||||||    
T  42677782 gtggtggttatgctttttgtgggttttcttctatgag-tttgttgttgatgaggttttc-aatacatggatgttagacactgtgacttgtttaaggtgcg 42677879  T
Q  123 gttacatga 131  Q
    |||||||||    
T  42677880 gttacatga 42677888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 23 - 120
Target Start/End: Complemental strand, 12130488 - 12130392
Alignment:
Q  23 gtggtggttatgctttttgtggattttcttctacgagttttgttgttgatgatgttttcaaatacacggatgttagctggtgtgggttgtttaaggtg 120  Q
    |||||||||||| |||||||   |||||||||| |||||| ||||||||||| ||||||||||||| |||||||||  |  |||| ||||||||||||    
T  12130488 gtggtggttatgatttttgttagttttcttctatgagttt-gttgttgatgaggttttcaaatacatggatgttagacgacgtggcttgtttaaggtg 12130392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 206 - 317
Target Start/End: Original strand, 42678068 - 42678179
Alignment:
Q  206 aagtttatatttgatacatgagtgtttgtttaggtgttccatatatctact-gacacttttcctttgtatgttgctctttatgtcttctagcttagcatt 304  Q
    |||||| |||||||| ||||| ||||||||| ||||||||| |||| |||  |||||||||||||| |||||| || |||| |||| ||||| |||||||    
T  42678068 aagtttgtatttgatgcatga-tgtttgtttgggtgttccacatatatacgagacacttttcctttttatgttactttttaagtctcctagcctagcatt 42678166  T
Q  305 ccttgtgcttgct 317  Q
     || |||||||||    
T  42678167 tctcgtgcttgct 42678179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 206 - 317
Target Start/End: Complemental strand, 45872802 - 45872690
Alignment:
Q  206 aagtttatatttgatacatgagtgtttgtttaggtgttccatatatctactga-cacttttcctttgtatgttgctctttatgtcttctagcttagcatt 304  Q
    |||||| |||||||||  ||||||||||||| ||||||||  |||| ||| || ||||||| |||||||||||| | |||| ||||  |||| ||| |||    
T  45872802 aagtttgtatttgatatgtgagtgtttgtttgggtgttccgcatatatacggaacactttttctttgtatgttgttttttaagtctcatagcctagtatt 45872703  T
Q  305 ccttgtgcttgct 317  Q
    |||||||||||||    
T  45872702 ccttgtgcttgct 45872690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 317
Target Start/End: Complemental strand, 12130296 - 12130182
Alignment:
Q  203 taaaagtttatatttgatacatgagtgtttgtttaggtgttccatatatctac-tgacacttttcctttgtatgttgctctttatgtcttctagcttagc 301  Q
    ||||||||| |||||| |||||| |||||||||| ||||||||  |||| ||| | ||||||||| | |||||| |||| |||| |||| ||||| ||||    
T  12130296 taaaagtttctatttg-tacatgggtgtttgtttgggtgttccgcatatatacatcacacttttcttctgtatgatgctttttaagtctcctagcctagc 12130198  T
Q  302 attccttgtgcttgct 317  Q
    ||||||| ||| ||||    
T  12130197 attccttctgcatgct 12130182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 317
Target Start/End: Original strand, 56092771 - 56092883
Alignment:
Q  206 aagtttatatttgatacatgagtgtttgtttaggtgttccatatatctactg-acacttttcctttgtatgttgctctttatgtcttctagcttagcatt 304  Q
    |||||| |||||||||||||  |||||||||  |||||||  |||| |||   ||||||||||| ||||| ||| | ||||  ||| ||||| |||||||    
T  56092771 aagtttgtatttgatacatggatgtttgtttgtgtgttccgcatatatacgacacacttttcctgtgtatattgttttttaattctcctagcctagcatt 56092870  T
Q  305 ccttgtgcttgct 317  Q
    |||||||||||||    
T  56092871 ccttgtgcttgct 56092883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 213 - 317
Target Start/End: Original strand, 26331551 - 26331656
Alignment:
Q  213 tatttgatacatgagtgtttgtttaggtgttccatatatctactga-cacttttcctttgtatgttgctctttatgtcttctagcttagcattccttgtg 311  Q
    |||||||||||||||||||||||| | ||||||  |||| |||  | |||||||||||||||||||||| ||||  ||| ||||| ||||||||||||||    
T  26331551 tatttgatacatgagtgtttgtttggatgttccgcatatatacgaaacacttttcctttgtatgttgctttttaaatctcctagcctagcattccttgtg 26331650  T
Q  312 cttgct 317  Q
    ||||||    
T  26331651 cttgct 26331656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 213 - 317
Target Start/End: Original strand, 26331893 - 26331998
Alignment:
Q  213 tatttgatacatgagtgtttgtttaggtgttccatatatctactga-cacttttcctttgtatgttgctctttatgtcttctagcttagcattccttgtg 311  Q
    |||||||||||||||||||||||| | ||||||  |||| |||  | |||||||||||||||||||||| ||||  ||| ||||| ||||||||||||||    
T  26331893 tatttgatacatgagtgtttgtttggatgttccgcatatatacgaaacacttttcctttgtatgttgctttttaaatctcctagcctagcattccttgtg 26331992  T
Q  312 cttgct 317  Q
    ||||||    
T  26331993 cttgct 26331998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 23 - 117
Target Start/End: Complemental strand, 40680840 - 40680747
Alignment:
Q  23 gtggtggttatgctttttgtggattttcttctacgagttttgttgttgatgatgttttcaaatacacggatgttagctggtgtgggttgtttaag 117  Q
    |||||| ||||||||||||  | |||||||||| |||||| ||||||||| | ||||||||||||| | |||||||  ||||||| |||||||||    
T  40680840 gtggtgattatgctttttgaaggttttcttctatgagttt-gttgttgataaggttttcaaatacatgaatgttagacggtgtggcttgtttaag 40680747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 258 - 317
Target Start/End: Complemental strand, 40680606 - 40680547
Alignment:
Q  258 acacttttcctttgtatgttgctctttatgtcttctagcttagcattccttgtgcttgct 317  Q
    ||||||||||||||||||||||| |||| ||||  || | ||||||||||||||||||||    
T  40680606 acacttttcctttgtatgttgctttttaagtctcttaacctagcattccttgtgcttgct 40680547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 42221360 - 42221279
Alignment:
Q  17 gtgcttgtggtggttatgctttttgtggattttcttctacgagttttgttgttgatgatgttt-tcaaatacacggatgttag 98  Q
    |||||||||||||||||| ||||||||| | |||||||| ||| |||  ||||||||  |||| ||||||||| |||||||||    
T  42221360 gtgcttgtggtggttatgatttttgtgggtcttcttctatgag-tttactgttgatggggtttctcaaatacatggatgttag 42221279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 98
Target Start/End: Original strand, 34574299 - 34574389
Alignment:
Q  11 gtggtggtgcttgtggtggttatg---ctttttgtggattttcttctacgagttttgttgttgatgatgttt-tcaaatacacggatgttag 98  Q
    ||||| ||||||||||||| ||||    ||||||||| |||||||||| ||| |||||||||||||  |||| ||||||||| |||||||||    
T  34574299 gtggttgtgcttgtggtggctatgtttttttttgtgggttttcttctatgag-tttgttgttgatgtggtttctcaaatacatggatgttag 34574389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 251
Target Start/End: Original strand, 40600358 - 40600403
Alignment:
Q  206 aagtttatatttgatacatgagtgtttgtttaggtgttccatatat 251  Q
    |||||| |||||||| ||||||||||||||| ||||||||| ||||    
T  40600358 aagtttgtatttgatgcatgagtgtttgtttgggtgttccacatat 40600403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 47; Significance: 8e-18; HSPs: 3)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 203 - 269
Target Start/End: Complemental strand, 269738 - 269672
Alignment:
Q  203 taaaagtttatatttgatacatgagtgtttgtttaggtgttccatatatctactgacacttttcctt 269  Q
    ||||||||||||||||||||||| |||||||||||||||||||  |||| ||| |||||||||||||    
T  269738 taaaagtttatatttgatacatgggtgtttgtttaggtgttccgcatatgtacggacacttttcctt 269672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 76 - 130
Target Start/End: Complemental strand, 269864 - 269810
Alignment:
Q  76 gttttcaaatacacggatgttagctggtgtgggttgtttaaggtgcggttacatg 130  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  269864 gttttcaaatacacggatgttagctagtgtggtttgtttaaggtgcggttacatg 269810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 269911 - 269866
Alignment:
Q  7 tttggtggtggtgcttgtggtggttatgctttttgtggattttctt 52  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  269911 tttggtggtggtgcttgtggtggttatgctttttgtggattttctt 269866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 206 - 317
Target Start/End: Complemental strand, 2818 - 2706
Alignment:
Q  206 aagtttatatttgatacatgagtgtttgtttaggtgttccatatatctactg-acacttttcctttgtatgttgctctttatgtcttctagcttagcatt 304  Q
    |||||| ||||||||||| | || ||||||| | ||||||  |||| ||| | |||||||||||||||||||||||  ||| |||| ||||  |||||||    
T  2818 aagtttgtatttgatacaagggtctttgtttggatgttccgcatatatacggcacacttttcctttgtatgttgcttgttaagtctcctagtctagcatt 2719  T
Q  305 ccttgtgcttgct 317  Q
    |||||||||||||    
T  2718 ccttgtgcttgct 2706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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