View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9667_low_35 (Length: 311)
Name: NF9667_low_35
Description: NF9667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9667_low_35 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 38 - 298
Target Start/End: Complemental strand, 12932117 - 12931857
Alignment:
| Q |
38 |
accggtattggtttgaacacacacatcaccaattccaacaatatctgcaatgctattattgcccatctttactttgccaaagtctcctactttatacatc |
137 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
12932117 |
accggtattggtttgaacacacacatcaccaattccaacaatatctgcaatgctattattgcccatctttactttgccaaagtctcctactttgtacatc |
12932018 |
T |
|
| Q |
138 |
gtaaagaattctttgttggaagtagcatgataagaagctgctgagtcaatgacccattcaacacatgaatctgcaacatgacattcttcttcttcaactg |
237 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
12932017 |
gtaaagaattctttattggaagtagcgtgataagaagctgctgagtcaatgacccattcaacacatgaatctgcaacatgacattcttcttcttcaacag |
12931918 |
T |
|
| Q |
238 |
aaagcaacaccacttccccatcaactactggggttgtggtattttcatcttcgtctggtct |
298 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12931917 |
aaaacaacaccacttccccatcaactactggggttgtggtattttcatcttcgtctggtct |
12931857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 38 - 298
Target Start/End: Complemental strand, 14175387 - 14175127
Alignment:
| Q |
38 |
accggtattggtttgaacacacacatcaccaattccaacaatatctgcaatgctattattgcccatctttactttgccaaagtctcctactttatacatc |
137 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
14175387 |
accggtattggtttgaacacacacatcaccaattccaacaatatctgcaatgctattattgcccatctttactttgccaaagtctcctactttgtacatt |
14175288 |
T |
|
| Q |
138 |
gtaaagaattctttgttggaagtagcatgataagaagctgctgagtcaatgacccattcaacacatgaatctgcaacatgacattcttcttcttcaactg |
237 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
14175287 |
gtaaagaattctttattggaagtagcgtgataagaagctgctgagtcaatgacccattcaacacatgaatctgcaacatgacattcttcttcttcaacag |
14175188 |
T |
|
| Q |
238 |
aaagcaacaccacttccccatcaactactggggttgtggtattttcatcttcgtctggtct |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14175187 |
aaagcaacaccacttccccatcaactactggggttgtggtattttcatcttcgtctggtct |
14175127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 40 - 298
Target Start/End: Original strand, 28610493 - 28610751
Alignment:
| Q |
40 |
cggtattggtttgaacacacacatcaccaattccaacaatatctgcaatgctattattgcccatctttactttgccaaagtctcctactttatacatcgt |
139 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
28610493 |
cggtattggtttgaacacacacatcaccaattccaacaatatctgcaatgctattattgcccatctttactttgccaaagtctcctactttgtacatcgt |
28610592 |
T |
|
| Q |
140 |
aaagaattctttgttggaagtagcatgataagaagctgctgagtcaatgacccattcaacacatgaatctgcaacatgacattcttcttcttcaactgaa |
239 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
28610593 |
aaagaattctttattggaagtagcgtgataagaagctgctgagtcaatgacccattaaacacatgaatctgcaagatgacattcttcttcttcaacagaa |
28610692 |
T |
|
| Q |
240 |
agcaacaccacttccccatcaactactggggttgtggtattttcatcttcgtctggtct |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28610693 |
agcaacaccacttccccatcaactactggggttgtggtattttcatcttcgtctggtct |
28610751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 43 - 289
Target Start/End: Original strand, 38996099 - 38996347
Alignment:
| Q |
43 |
tattggtttgaacacacacatcaccaattccaacaatatctgcaatgctattattgcccatctttactttgccaaagtctcctactttatacatcgtaaa |
142 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| || ||||||| |||| ||||| ||||||||| ||||||||||| |||| ||||||||||| |
|
|
| T |
38996099 |
tattggtttaaacacacacatcaccaattccaacaatatttgtaatgctactatttcccatatttactttgtcaaagtctcctgctttgtacatcgtaaa |
38996198 |
T |
|
| Q |
143 |
gaattc-tttgttggaagtagcatgataagaagctgctgagtcaatgacccattcaacacatgaatctgcaacatgacattcttcttcttcaactgaaag |
241 |
Q |
| |
|
|||||| |||||||||||| |||||| ||||| || ||||||||| | |||||||||| ||||| |||||| ||| ||||||||||||||||| |||| |
|
|
| T |
38996199 |
gaattcttttgttggaagtgacatgattagaagatgttgagtcaattatccattcaacaaatgaaactgcaatatggcattcttcttcttcaacataaag |
38996298 |
T |
|
| Q |
242 |
caacaccacttccccatcaactact-ggggttgtggtattttcatcttc |
289 |
Q |
| |
|
|||| |||||||||||| || | | ||||||||||||||||||||||| |
|
|
| T |
38996299 |
caacgccacttccccattaagtgttgggggttgtggtattttcatcttc |
38996347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 38 - 291
Target Start/End: Original strand, 24874368 - 24874624
Alignment:
| Q |
38 |
accggtattggtttgaacacacacatcaccaattccaacaatatctgcaatgctattattgcccatctttactttgccaa---agtctcctactttatac |
134 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||||||||||| |||| |||| ||| | ||||| |||||||||| ||||||||||||| ||| |
|
|
| T |
24874368 |
accgatattggtttgaacacacacatcattaattccaacaatatctacaatattattgttgtctatcttgactttgccaacaaagtctcctactttgtac |
24874467 |
T |
|
| Q |
135 |
atcgtaaagaattctttgttggaagtagcatgataagaagctgctgagtcaatgacccattcaacacatgaatctgcaacatgacattcttcttcttcaa |
234 |
Q |
| |
|
||| ||||||||||||||||||||| ||||||||||||| ||| ||||||| ||||||| ||||||||||||| ||| | |||||||||||| ||||| |
|
|
| T |
24874468 |
atcacaaagaattctttgttggaagtggcatgataagaagatgcagagtcaacgacccatataacacatgaatctacaatacgacattcttctttttcaa |
24874567 |
T |
|
| Q |
235 |
ctgaaagcaacaccacttccccatcaactactggggttgtggtattttcatcttcgt |
291 |
Q |
| |
|
| ||||||||| || |||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
24874568 |
caaaaagcaacatcatttccccatcacctactaaggttgtggtattttcatcttcgt |
24874624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University