View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9667_low_50 (Length: 277)

Name: NF9667_low_50
Description: NF9667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9667_low_50
NF9667_low_50
[»] chr5 (3 HSPs)
chr5 (7-273)||(32267683-32267953)
chr5 (11-264)||(41889181-41889438)
chr5 (7-273)||(41901156-41901426)
[»] chr4 (3 HSPs)
chr4 (76-191)||(547193-547308)
chr4 (108-198)||(10634134-10634224)
chr4 (166-203)||(53761480-53761517)
[»] chr8 (1 HSPs)
chr8 (7-192)||(17627762-17627947)
[»] chr6 (4 HSPs)
chr6 (130-192)||(10579461-10579523)
chr6 (166-198)||(6602905-6602937)
chr6 (166-198)||(7119506-7119538)
chr6 (166-198)||(7131984-7132016)
[»] chr3 (1 HSPs)
chr3 (169-202)||(514421-514454)
[»] chr1 (1 HSPs)
chr1 (7-140)||(9586847-9586980)


Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 7 - 273
Target Start/End: Original strand, 32267683 - 32267953
Alignment:
Q  7 aagcagctgcaaattggagaaggtggaagcaaacgttatgatatattcatcaaataactatggattgtgagccaaatgaagatacttcaattgagggcaa 106  Q
    |||||||||||||||||||||| ||||||||| | |  |||||||||||||||||| | ||||||||||||||||| |||||||||| ||||||||||||    
T  32267683 aagcagctgcaaattggagaagatggaagcaagcatggtgatatattcatcaaatagccatggattgtgagccaaacgaagatactttaattgagggcaa 32267782  T
Q  107 gcaacaaaatccattaaagatttagaactctctagactctttttccaaatacatttgtgttccattttgatctcactaagtgaagggcagttctt----a 202  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||    |    
T  32267783 gcaacaaaatccatcaaagatttagaactctctagactctttttcccaatacatgtgtgttccattttgatctcactaagtgaagggcagttcttaagga 32267882  T
Q  203 gtacaaagaaggctgattctgtgagcattgaacaatgagtcaaatttatagattccaaatcaacacgaaac 273  Q
    | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  32267883 gaacaaagaaggctgattctgtaagcattgaacaatgagtcaaatttatagattccaaatcaacaagaaac 32267953  T

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Target: chr5; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 11 - 264
Target Start/End: Complemental strand, 41889438 - 41889181
Alignment:
Q  11 agctgcaaattggagaaggtggaagcaaacgttatgatatattcatcaaataactatggattgtgagccaaatgaagatacttcaattgagggcaagcaa 110  Q
    ||||||||||| | |||  ||||||||||| ||||||| | ||||||  ||||| ||||||| ||||||||| |||||| ||| ||||||||| | ||||    
T  41889438 agctgcaaattagggaaaatggaagcaaacattatgatgtcttcatctgataaccatggattttgagccaaacgaagatgctttaattgagggtatgcaa 41889339  T
Q  111 caaaatccattaaagatttagaactctctagactctttttccaaatacatttgtgttccattttgatctcactaagtgaagggcagttctt----agtac 206  Q
    |||||||||| ||||||||||| |||| |||||||| ||| | ||||||  ||||||||||||||||  ||| ||||||||| || |||||    ||| |    
T  41889338 caaaatccatcaaagatttagagctctttagactctattttccaatacacgtgtgttccattttgataacacaaagtgaaggacaattcttaagaagtgc 41889239  T
Q  207 aaagaaggctgattctgtgagcattgaacaatgagtcaaatttatagattccaaatca 264  Q
    |||||| |||||||||||||| || ||||||||| |||| ||||||||| ||||||||    
T  41889238 aaagaatgctgattctgtgagtatcgaacaatgattcaagtttatagataccaaatca 41889181  T

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Target: chr5; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 7 - 273
Target Start/End: Complemental strand, 41901426 - 41901156
Alignment:
Q  7 aagcagctgcaaattggagaaggtggaagcaaacgttatgatatattcatcaaataactatggattgtgagccaaatgaagatacttcaattgagggcaa 106  Q
    ||||||||||||||||| |||  ||||||| ||| || |||| | ||||||||||||| | ||||||||||||||  |||||||||| ||||||||| |     
T  41901426 aagcagctgcaaattggggaaaatggaagcgaacattgtgatgtcttcatcaaataaccacggattgtgagccaatcgaagatactttaattgagggtat 41901327  T
Q  107 gcaacaaaatccattaaagatttagaactctctagactctttttccaaatacatttgtgttccattttgatctcactaagtgaagggcagttctt----a 202  Q
    |||||||||| ||| |||||| |||||||||||||||||| ||||| ||||| | ||| |||||| ||||| |||| ||||||||| || ||| |    |    
T  41901326 gcaacaaaattcatcaaagatctagaactctctagactctctttcccaatacctgtgtcttccatattgatatcaccaagtgaaggacaattcctaagaa 41901227  T
Q  203 gtacaaagaaggctgattctgtgagcattgaacaatgagtcaaatttatagattccaaatcaacacgaaac 273  Q
    ||||||||||||||||| | |||| ||| |  |||  || ||| ||||||||| |||||||| || |||||    
T  41901226 gtacaaagaaggctgataccgtgaccatcgggcaactagccaagtttatagataccaaatcaccaagaaac 41901156  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 191
Target Start/End: Original strand, 547193 - 547308
Alignment:
Q  76 agccaaatgaagatacttcaattgagggcaagcaacaaaatccattaaagatttagaactctctagactctttttccaaatacatttgtgttccattttg 175  Q
    ||||||||| ||| |||||||||||||||   ||||||||||| | ||||| |||||| |||||| |||||   ||| |||   | || |||||||||||    
T  547193 agccaaatggagagacttcaattgagggcttacaacaaaatccttgaaagaattagaattctctacactctccatcccaatttttgtgagttccattttg 547292  T
Q  176 atctcactaagtgaag 191  Q
    ||||||||||||||||    
T  547293 atctcactaagtgaag 547308  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 198
Target Start/End: Complemental strand, 10634224 - 10634134
Alignment:
Q  108 caacaaaatccattaaagatttagaactctctagactctttttccaaatacatttgtgttccattttgatctcactaagtgaagggcagtt 198  Q
    ||||||||||| | ||||| |||||| |||| | | ||||||||| |||| |  ||  ||||||||||||||||||||||||||| |||||    
T  10634224 caacaaaatccctcaaagaattagaattctcgaaattctttttcccaatagacgtgcattccattttgatctcactaagtgaaggacagtt 10634134  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 166 - 203
Target Start/End: Complemental strand, 53761517 - 53761480
Alignment:
Q  166 ttccattttgatctcactaagtgaagggcagttcttag 203  Q
    ||||||||||||||||||||||||||| ||||| ||||    
T  53761517 ttccattttgatctcactaagtgaaggacagtttttag 53761480  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 192
Target Start/End: Complemental strand, 17627947 - 17627762
Alignment:
Q  7 aagcagctgcaaattggagaaggtggaagcaaacgttatgatatattcatcaaataactatggattgtgagccaaatgaagatacttcaattgagggcaa 106  Q
    |||||| |||||||||| |||  ||||||||||| || |||| | ||||||  ||| | ||| ||||  ||||||||  ||| | || ||||||||||      
T  17627947 aagcagttgcaaattggggaaaatggaagcaaacattttgatgttttcatcgcatagcaatgaattgaaagccaaatagagagattttaattgagggctt 17627848  T
Q  107 gcaacaaaatccattaaagatttagaactctctagactctttttccaaatacatttgtgttccattttgatctcactaagtgaagg 192  Q
     |||| |||||||  ||||| |||||| ||| |||||||| || || |||| || ||  ||||||||| |||||| ||||||||||    
T  17627847 acaacgaaatccaccaaagaattagaattctttagactctcttccccaatagatgtgcattccatttttatctcattaagtgaagg 17627762  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 192
Target Start/End: Complemental strand, 10579523 - 10579461
Alignment:
Q  130 agaactctctagactctttttccaaatacatttgtgttccattttgatctcactaagtgaagg 192  Q
    |||| |||||| ||||||| ||||||||  | ||| ||||||||||||||||||||| |||||    
T  10579523 agaattctctacactctttgtccaaatagctgtgttttccattttgatctcactaagcgaagg 10579461  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 198
Target Start/End: Complemental strand, 6602937 - 6602905
Alignment:
Q  166 ttccattttgatctcactaagtgaagggcagtt 198  Q
    ||||||||||||||||||||||||||| |||||    
T  6602937 ttccattttgatctcactaagtgaaggacagtt 6602905  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 198
Target Start/End: Original strand, 7119506 - 7119538
Alignment:
Q  166 ttccattttgatctcactaagtgaagggcagtt 198  Q
    ||||||||||| |||||||||||||||||||||    
T  7119506 ttccattttgaactcactaagtgaagggcagtt 7119538  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 198
Target Start/End: Original strand, 7131984 - 7132016
Alignment:
Q  166 ttccattttgatctcactaagtgaagggcagtt 198  Q
    ||||||||||| |||||||||||||||||||||    
T  7131984 ttccattttgaactcactaagtgaagggcagtt 7132016  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 169 - 202
Target Start/End: Complemental strand, 514454 - 514421
Alignment:
Q  169 cattttgatctcactaagtgaagggcagttctta 202  Q
    |||||||||||||||||||||||| |||||||||    
T  514454 cattttgatctcactaagtgaaggacagttctta 514421  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 140
Target Start/End: Original strand, 9586847 - 9586980
Alignment:
Q  7 aagcagctgcaaattggagaaggtggaagcaaacgttatgatatattcatcaaataactatggattgtgagccaaatgaagatacttcaattgagggcaa 106  Q
    ||||||||||||||||| |||  | ||||||||| ||||||| | || |||   |||| || ||||| || |||||| |||| ||||||||||||| |      
T  9586847 aagcagctgcaaattggggaaaattgaagcaaacattatgatgtttttatctcttaaccattgattgcgacccaaatcaagagacttcaattgaggtctt 9586946  T
Q  107 gcaacaaaatccattaaagatttagaactctcta 140  Q
     |||||| |||| | ||| |||||||| ||||||    
T  9586947 acaacaatatccttcaaaaatttagaattctcta 9586980  T

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