View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9667_low_52 (Length: 271)
Name: NF9667_low_52
Description: NF9667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9667_low_52 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 42237679 - 42237947
Alignment:
| Q |
1 |
tgtgctttatatcactgttcctaagaccaaagttgaacgcaaggttattgacgttcaaatccagtgacatgcgaggactttttatagcgtcatcttcaac |
100 |
Q |
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| T |
42237679 |
tgtgctttatatcactgttcctaagaccaaagttgaacgcaaggttattgacgttcaaatccagtgacatgcgaggactttttatagcgtcctcttcaac |
42237778 |
T |
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| Q |
101 |
tggtgtgcttatatattttgctaccatgtaacaacg--tttattaagttaaaaataaataagatacttttctactttgcaaatgtctacttctccttata |
198 |
Q |
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|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42237779 |
tggtgtgcttatatattttgctaccatgtaacaatgtttttattaagttaaaaataaataagatacttttctactttgcaaatgtctacttctccttata |
42237878 |
T |
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| Q |
199 |
tatttaggtatggtttctttggtattgat-tttgttagtttgtttgaaagaa-ttatgagaataattta |
265 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||| |
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| T |
42237879 |
tatttaggtatggtttctttggtattgatctttgttagtttgtttgaaagaatttatgaaaataattta |
42237947 |
T |
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