View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9667_low_6 (Length: 509)
Name: NF9667_low_6
Description: NF9667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9667_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 436; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 3 - 465
Target Start/End: Complemental strand, 13726475 - 13726015
Alignment:
| Q |
3 |
tagcattgtatgtttgtcttttcttatagttaaaacctcccttagttataacaaataaaagtgcacatattaggggaaagtagcatcaaatgagatgcat |
102 |
Q |
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| T |
13726475 |
tagcattgtatctttgtcttttcttatagttaaaacctcccttagttataacaaataaaagtgcacatattaggggaaagtagcatcaaatgagatgcat |
13726376 |
T |
|
| Q |
103 |
aaacgttgaaagatgggttcacattcacataaggattaagaacgtgacaatgaggaaatacctccctcagttcagttccgtatacccttgatggctacat |
202 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13726375 |
aaacgttgaaagatgggttcacattcacataaggtttaagaacgtgacaatgaggaaatacctccctcagttcagttccgtatacccttgatggctacat |
13726276 |
T |
|
| Q |
203 |
aatagaaactgctaatcaaattaaaacaaacaaaattgtatattactttatgtttatgaagcaggaaataggtcacgcatatttaacaggctcattagtc |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13726275 |
aatagaaactgctaatcaaattaaaacaaacaaaattgtatattactttatgtttatgaagcaggaaataggtcacgcatatttaacaggctcattagtc |
13726176 |
T |
|
| Q |
303 |
ttgttgaaaatatagtgatcacgccacataaaatcaggacattatgtaagagccggcaagcatgtttaattgttaaagaaaataaaataccaatgacaaa |
402 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13726175 |
ttgttgaaaatatagtgatcacgccacataaaatcaggacattatgtaagagctggcaagcatgtttaattgttaaagaaaataaaataccaatgacaaa |
13726076 |
T |
|
| Q |
403 |
tgttaacatatgtgtctttaagctcttaattttgagtgtttaattaatctcgtatgtacgcat |
465 |
Q |
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| T |
13726075 |
tgttaac--atgtgtctttaagctcttaattttgagtgtttaattaatcttgtatgtacgcat |
13726015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 3 - 465
Target Start/End: Complemental strand, 13667200 - 13666740
Alignment:
| Q |
3 |
tagcattgtatgtttgtcttttcttatagttaaaacctcccttagttataacaaataaaagtgcacatattaggggaaagtagcatcaaatgagatgcat |
102 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13667200 |
tagcattgtatctttgtcttttcttatagttaaaacctcccttagttataacaaataaaagtgcacatattaggggaaagtagcatcaaatgagatgcat |
13667101 |
T |
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| Q |
103 |
aaacgttgaaagatgggttcacattcacataaggattaagaacgtgacaatgaggaaatacctccctcagttcagttccgtatacccttgatggctacat |
202 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13667100 |
aaacgttgaaagatgggttcacattcacataaggtttaagaacgtgacaatgaggaaatacctccctcagttcagttccgtatacccttgatggctacat |
13667001 |
T |
|
| Q |
203 |
aatagaaactgctaatcaaattaaaacaaacaaaattgtatattactttatgtttatgaagcaggaaataggtcacgcatatttaacaggctcattagtc |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
13667000 |
aatagaaactgctaatcaaattaaaacaaacaaaattgtatattactttatgtttatgaagcaggaaataggtcacgcatatctaacaggctcattagtc |
13666901 |
T |
|
| Q |
303 |
ttgttgaaaatatagtgatcacgccacataaaatcaggacattatgtaagagccggcaagcatgtttaattgttaaagaaaataaaataccaatgacaaa |
402 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13666900 |
ttgttgaaaatatagtgatcacgccacataaaatcaggacattatgtaagagctggcaagcatgtttaattgttaaagaaaataaaataccaatgacaaa |
13666801 |
T |
|
| Q |
403 |
tgttaacatatgtgtctttaagctcttaattttgagtgtttaattaatctcgtatgtacgcat |
465 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
13666800 |
tgttaac--atgtgtctttaagctcttaattttgagtgtttaattaatcttgtatgtacgcat |
13666740 |
T |
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