View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9667_low_60 (Length: 250)
Name: NF9667_low_60
Description: NF9667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9667_low_60 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 43360447 - 43360686
Alignment:
| Q |
1 |
ttatgatttaatggatgacctctttgacgcaaaagcatggacagagattatattagtagttgatttctcaaagtaatcggtgtaaattagtattaggagg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43360447 |
ttatgatttaatggatgacctctttgacgcaaaagcatggacagagattatattagtagttgatttctcaaagtaatcggtgtaaattagtattaggagg |
43360546 |
T |
|
| Q |
101 |
taaattagtagtttatttctcaaggggaatgattgtgtactgcctaataactactgaaattaacaagataaaatttcagaacacgagagaattacctgct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43360547 |
taaattagtagtttatttctcaaggggaatgattgtgtactgcctaataactactgaaagtaacaagataaaatttcagaacacgagagaattacctgct |
43360646 |
T |
|
| Q |
201 |
gaagcacaattaaagaggttacggtgacttctgctctgtg |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43360647 |
gaagcacaattaaagaggttacggtgacttctgctctgtg |
43360686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 86
Target Start/End: Complemental strand, 17637674 - 17637603
Alignment:
| Q |
15 |
atgacctctttgacgcaaaagcatggacagagattatattagtagttgatttctcaaagtaatcggtgtaaa |
86 |
Q |
| |
|
|||||||||||||| |||||| ||||||| |||||| || ||||||||||||||||||| || |||||||| |
|
|
| T |
17637674 |
atgacctctttgacccaaaagtatggacaaagattaaatcagtagttgatttctcaaaggaacaggtgtaaa |
17637603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 43362731 - 43362768
Alignment:
| Q |
6 |
atttaatggatgacctctttgacgcaaaagcatggaca |
43 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
43362731 |
atttgatgcatgacctctttgacgcaaaagcatggaca |
43362768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University