View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9667_low_73 (Length: 240)
Name: NF9667_low_73
Description: NF9667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9667_low_73 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 15 - 223
Target Start/End: Original strand, 49163394 - 49163603
Alignment:
| Q |
15 |
agaatagatagtttttggacggtagctgaattgacaaatcattgacctaattccgttacagataaacctgatcatgtcaaa-taatatgttgtcaagatc |
113 |
Q |
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| T |
49163394 |
agaatagatagtttttggacggtagctgaattgacaaatcattgacctaattccgttacaaataaacctgatcatgtcaaagtaatatgttgtcaagatc |
49163493 |
T |
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| Q |
114 |
ataaccgacgtatgccaattcccattgccaaggaagactcaagcatacaattcatcacaaatcctaatgatttattctacctgaaatcccagtgtccatg |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
49163494 |
ataaccgacgtatgccaattcccattgccaaggaagactcaagcatacaattcatcacaaatcctaatgatttattctacctaaaatcccagtgtccatg |
49163593 |
T |
|
| Q |
214 |
accagcaacc |
223 |
Q |
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|||||||||| |
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| T |
49163594 |
accagcaacc |
49163603 |
T |
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