View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9667_low_78 (Length: 235)
Name: NF9667_low_78
Description: NF9667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9667_low_78 |
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Alignment Details
Target: chr7 (Bit Score: 168; Significance: 4e-90; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 8482656 - 8482881
Alignment:
| Q |
1 |
ttattctgatcttagtataatttctcttctatttaggaacatcccaaaagttgttcataacaaagtcact-atctttccagactagtggtggcgatctgg |
99 |
Q |
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| T |
8482656 |
ttattctgatcttagtataatttctcttctatttaggaacatcccaaaagttgttcataacaaactcacttatctttccagactagtggtggtgatctgg |
8482755 |
T |
|
| Q |
100 |
aacattggaaatactttgtactcatgatgatgttttgatcaacctcttgaatggttactatgtcaaaccg---tcacaaacatttgaagagaaagatcaa |
196 |
Q |
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| T |
8482756 |
aacattggaaatactttgtacttatgatgatgttttgatcaacctcttgaatggttactatgtcaaaccgtactcccacacatttgaagagaaagatcaa |
8482855 |
T |
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| Q |
197 |
tcctgccgtgttac-aaacccacagg |
221 |
Q |
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|||||| || |||| ||||||||||| |
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| T |
8482856 |
tcctgcggtattacaaaacccacagg |
8482881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 10 - 103
Target Start/End: Complemental strand, 8355610 - 8355517
Alignment:
| Q |
10 |
tcttagtataatttctcttctatttaggaacatcccaaaagttgttcataacaaagtcactatctttccagactagtggtggcgatctggaaca |
103 |
Q |
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| T |
8355610 |
tcttagtataatttctcttctatttaggaacatcccaaaagttgttcataacaaactcactatctttccagactagtggtggcgatctggaaca |
8355517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 165 - 221
Target Start/End: Complemental strand, 8349464 - 8349408
Alignment:
| Q |
165 |
aaccgtcacaaacatttgaagagaaagatcaatcctgccgtgttacaaacccacagg |
221 |
Q |
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| T |
8349464 |
aaccgtcccacacatttgaagagaaagatcaatcctgcggtgttacaaacccacagg |
8349408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 165 - 221
Target Start/End: Complemental strand, 8355517 - 8355461
Alignment:
| Q |
165 |
aaccgtcacaaacatttgaagagaaagatcaatcctgccgtgttacaaacccacagg |
221 |
Q |
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||||||| || ||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
8355517 |
aaccgtcccacacatttgaagagaaagatcaatcctgcggtgttacaaacccacagg |
8355461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 37486045 - 37485994
Alignment:
| Q |
10 |
tcttagtataatttctcttctatttaggaacatcccaaaagttgttcataac |
61 |
Q |
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|||||| ||| ||||||||| ||||| ||||| ||||||||||||||||||| |
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| T |
37486045 |
tcttagcatagtttctcttccatttatgaacaacccaaaagttgttcataac |
37485994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 36866296 - 36866344
Alignment:
| Q |
16 |
tataatttctcttctatttaggaacatcccaaaagttgttcataacaaa |
64 |
Q |
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||||||||||||| ||||| ||||| || ||||||||||||||||||| |
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| T |
36866296 |
tataatttctctttcatttatgaacaaccaaaaagttgttcataacaaa |
36866344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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