View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9667_low_81 (Length: 229)
Name: NF9667_low_81
Description: NF9667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9667_low_81 |
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Alignment Details
Target: chr7 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 19 - 217
Target Start/End: Original strand, 38551801 - 38551998
Alignment:
| Q |
19 |
atttaactttcaacatccaatttaatttaattannnnnnnnatactactactattacgagaaccattattatttttcttcaaatagattttctaataaat |
118 |
Q |
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| T |
38551801 |
atttaactttcaacatccaatttaatttaattatttttttcatactactactat-acgagaaccattattatttttcttcaaatagattttctaataaat |
38551899 |
T |
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| Q |
119 |
acattacgtgaaccattattatttttctataaatagcataccatccatccnnnnnnnattcacttaatcaattcacaaatactctagctccaactccat |
217 |
Q |
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| T |
38551900 |
acattacgtgaaccattattatttttctataaatagcataccatacatcctttttttattcacttaatcgattcacaaagactccagctccaactccat |
38551998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 158
Target Start/End: Original strand, 38545477 - 38545532
Alignment:
| Q |
103 |
agattttctaataaatacattacgtgaaccattattatttttctataaatagcata |
158 |
Q |
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| T |
38545477 |
agattttctaataaaggaattatgtaagccattattatttttctataaatagcata |
38545532 |
T |
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