View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9668_low_1 (Length: 343)
Name: NF9668_low_1
Description: NF9668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9668_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 46 - 325
Target Start/End: Complemental strand, 5330291 - 5330012
Alignment:
| Q |
46 |
gagattgagttgagatttggacctgatagcaagtaacagtctggaaacacctaagttcctggctaaaatcaggcaaaccaatagtatgatgaagaattct |
145 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5330291 |
gagattgagttgagatttggacctgatagcaagtaacagtctggaaacacctaagttcctggctaaaatcaggcaaaccaatagtatgatgaagaattct |
5330192 |
T |
|
| Q |
146 |
attagtcccaaaatcattagaattaggtccaccaacaatacaaatcactggcaaattctcactataagcaccagcaattgcattaatcacacttaaccca |
245 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5330191 |
attagtcccaaaatcattagaattaggtccaccaacaatacaaatcactggcaaattctcactataagcaccagcaattgcattaatcacacttaaccca |
5330092 |
T |
|
| Q |
246 |
ccaacagtaaatgtaacaacacaagctcccacacctctagaccttgcatatccatcagcagcatatccagcattaagttc |
325 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
5330091 |
ccaacagtaaatgtaacaacacaagctcccacacctctagaccttgcatatccatcagcagcatatccagcattcagttc |
5330012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 46 - 325
Target Start/End: Complemental strand, 20434401 - 20434122
Alignment:
| Q |
46 |
gagattgagttgagatttggacctgatagcaagtaacagtctggaaacacctaagttcctggctaaaatcaggcaaaccaatagtatgatgaagaattct |
145 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20434401 |
gagattgagttgagatttggacctggtagcaagtaacagtctggaaacacctaagttcctggctaaaatcaggcaaaccaatagtatgatgaagaattct |
20434302 |
T |
|
| Q |
146 |
attagtcccaaaatcattagaattaggtccaccaacaatacaaatcactggcaaattctcactataagcaccagcaattgcattaatcacacttaaccca |
245 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20434301 |
attagtcccaaaatcattagaatttggtccaccaacaatacaaatcactggcaaattctcactataagcaccagcaattgcattaatcacacttaaccca |
20434202 |
T |
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| Q |
246 |
ccaacagtaaatgtaacaacacaagctcccacacctctagaccttgcatatccatcagcagcatatccagcattaagttc |
325 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20434201 |
ccaacagtaaatgtaacaacacaagctcccacacctctagaccttgcatatccatcagcagcatatccagcattaagttc |
20434122 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 118; Significance: 4e-60; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 66 - 319
Target Start/End: Complemental strand, 25604146 - 25603893
Alignment:
| Q |
66 |
acctgatagcaagtaacagtctggaaacacctaagttcctggctaaaatcaggcaaaccaatagtatgatgaagaattctattagtcccaaaatcattag |
165 |
Q |
| |
|
|||||| ||||||||||||| || |||||||| | ||||| ||||||||||| | ||||||||||||||||||||| ||| |||||||| ||||||||| |
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| T |
25604146 |
acctgaaagcaagtaacagtttgaaaacacctcaactcctgactaaaatcaggaacaccaatagtatgatgaagaatcctactagtcccataatcattag |
25604047 |
T |
|
| Q |
166 |
aattaggtccaccaacaatacaaatcactggcaaattctcactataagcaccagcaattgcattaatcacacttaacccaccaacagtaaatgtaacaac |
265 |
Q |
| |
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|||| |||||||||||||||||||| | |||||||||||||||||||||||||| || ||||||| ||||| |||||||||||||| || |||||||| |
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| T |
25604046 |
aattgggtccaccaacaatacaaataagcggcaaattctcactataagcaccagctatagcattaagaacactcaacccaccaacagtgaaagtaacaac |
25603947 |
T |
|
| Q |
266 |
acaagctcccacacctctagaccttgcatatccatcagcagcatatccagcatt |
319 |
Q |
| |
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|||||| || || || | |||| ||||| |||||||| ||||| |||||||| |
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| T |
25603946 |
acaagcaccgacgccacgtgaccgagcataaccatcagccgcataaccagcatt |
25603893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 123 - 274
Target Start/End: Complemental strand, 25623302 - 25623151
Alignment:
| Q |
123 |
ccaatagtatgatgaagaattctattagtcccaaaatcattagaattaggtccaccaacaatacaaatcactggcaaattctcactataagcaccagcaa |
222 |
Q |
| |
|
|||||||||||||||||||| || ||| | ||| ||||||| || |||||||||||||| || ||||| | |||||||||||||||||||||||||| | |
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| T |
25623302 |
ccaatagtatgatgaagaatcctgttacttccataatcattggagttaggtccaccaacgatgcaaataagcggcaaattctcactataagcaccagcta |
25623203 |
T |
|
| Q |
223 |
ttgcattaatcacacttaacccaccaacagtaaatgtaacaacacaagctcc |
274 |
Q |
| |
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| ||||||| ||||| |||||||||||||| || || || ||||||||||| |
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|
| T |
25623202 |
tagcattaagaacactcaacccaccaacagtgaaagttaccacacaagctcc |
25623151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 110 - 223
Target Start/End: Complemental strand, 4624941 - 4624828
Alignment:
| Q |
110 |
aaaatcaggcaaaccaatagtatgatgaagaattctattagtcccaaaatcattagaattaggtccaccaacaatacaaatcactggcaaattctcacta |
209 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||||| ||| | ||||||||||||||||| ||||||||||||||||| ||||| || ||||| |
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| T |
4624941 |
aaaatcaggtaaaccaatagtatgatgaagaattctgttagtaccatagtcattagaattaggtcctccaacaatacaaatcaccggcaagttttcactg |
4624842 |
T |
|
| Q |
210 |
taagcaccagcaat |
223 |
Q |
| |
|
||||| || ||||| |
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| T |
4624841 |
taagctccggcaat |
4624828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 98 - 319
Target Start/End: Complemental strand, 1877789 - 1877568
Alignment:
| Q |
98 |
aagttcctggctaaaatcaggcaaaccaatagtatgatgaagaattctattagtcccaaaatcattagaattaggtccaccaacaatacaaatcactggc |
197 |
Q |
| |
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||||||||| ||||||||||| |||||||| |||||||| ||||| | ||| | ||||||||||| ||||| || |||||||||| || || | ||| |
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| T |
1877789 |
aagttcctgactaaaatcaggtaaaccaatggtatgatggagaatcttgttacttccaaaatcattggaatttggggcaccaacaatgcatataattgga |
1877690 |
T |
|
| Q |
198 |
aaattctcactataagcaccagcaattgcattaatcacacttaacccaccaacagtaaatgtaacaacacaagctcccacacctctagaccttgcatatc |
297 |
Q |
| |
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| || |||||||||| ||||||||| ||||||| | || | || |||||| |||| ||||||||||| || || ||||||||| | || ||||||| |
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| T |
1877689 |
agatcttcactataagaaccagcaatagcattaagaatgctaagtccgccaacattaaaagtaacaacacatgcaccaacacctctacatctagcatatc |
1877590 |
T |
|
| Q |
298 |
catcagcagcatatccagcatt |
319 |
Q |
| |
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|||||| ||||| |||||||| |
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| T |
1877589 |
catcagtggcataaccagcatt |
1877568 |
T |
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